View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7234_low_4 (Length: 238)
Name: NF7234_low_4
Description: NF7234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7234_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4156419 - 4156205
Alignment:
| Q |
1 |
atcaaaaattctttccaacttcatttgatagggatttatttactccttaatctggtgactagtagtggtaagtaaggtcaaattttttgcttcatctaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4156419 |
atcaaaaattctttccaacttcatttgatagggatttatttactccttaatctggtgactagt---ggtaagtaaggtcaaattttttgcttcatctaca |
4156323 |
T |
|
| Q |
101 |
tagcaaacaggatgaaaggagttggtttttgcatttgaatcatagtaagtttttgtggaaacggatctacaagcatctggtttcacttttcccttgtaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4156322 |
tagcaaacaggatgaaaggagttggtttttgcatttaaatcatagtaagtttttgttgaaacggatctacaagcatctggtttcacttttcccttgtaag |
4156223 |
T |
|
| Q |
201 |
ccttacaaatgtatgtca |
218 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
4156222 |
ccctacaaatgtatgtca |
4156205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 4161113 - 4160958
Alignment:
| Q |
63 |
tagtggtaagtaaggtcaaattttttgcttcatctacatagcaaacaggatgaaaggagttggtttttgcatttgaatcatagtaagtttttgtggaaac |
162 |
Q |
| |
|
|||||| ||||| || || |||||| |||||||||||||||||| || ||||||||||||||| |||||||| || ||||| |||||| |||| ||||| |
|
|
| T |
4161113 |
tagtggcaagtatggacatatttttggcttcatctacatagcaaccatgatgaaaggagttggattttgcatccgagtcataataagttcttgttgaaac |
4161014 |
T |
|
| Q |
163 |
ggatctacaagcatctggtttcacttttcccttgtaagccttacaaatgtatgtca |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
4161013 |
tgatctacaagcatctggtttcaaacttcccttgtatgccttgcaaatatatgtca |
4160958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University