View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7235_high_2 (Length: 453)
Name: NF7235_high_2
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 53 - 453
Target Start/End: Original strand, 40957597 - 40957997
Alignment:
| Q |
53 |
gataacaaggtctctaaattttatcgtgttattatacaaagcaacatatgttgtgaagtagatcgatctgcattgatgttataaacttataatattgagt |
152 |
Q |
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| T |
40957597 |
gataacaaggtctctaaattttatcgtgttattatacaaagcaacatatgttgtgaagtagatcgatctgcattgatgttataaacttataatattgagt |
40957696 |
T |
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| Q |
153 |
ttggtaaatggtaacccccttttctcattcacgcgggggacagagagggtgctatttcttcctctttcatgaaacatagagttttatgcttttcaatttt |
252 |
Q |
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| T |
40957697 |
ttggtaaattgtaacccccttttctcattcacgcgggggacagagagggtgctatttcttcctctttcatgaaacatagagttttatgcttttcaatttt |
40957796 |
T |
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| Q |
253 |
ctgattccggagatgtttttctgtcaggacattacacaatccccgaatgacaccttaatgatcacagggcagtggttttaccgtccatatgaagcagaga |
352 |
Q |
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| T |
40957797 |
ctgattccggagatgtttttctgtcaggacattacacaatcccccaatgacaccttaatgatcacaggtcagtggttttaccgtccatatgaagcagaga |
40957896 |
T |
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| Q |
353 |
aaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgt |
452 |
Q |
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| T |
40957897 |
aaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgt |
40957996 |
T |
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| Q |
453 |
g |
453 |
Q |
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| T |
40957997 |
g |
40957997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 310 - 453
Target Start/End: Original strand, 40944861 - 40945004
Alignment:
| Q |
310 |
atgatcacagggcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttcc |
409 |
Q |
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| T |
40944861 |
atgatcacagggcagtggttctaccgtccagatgaagcagaaaaaaagggaggtggtagctggcaatccgttgacaccagagagctgttttatagtttcc |
40944960 |
T |
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| Q |
410 |
accaagacgctgttcctgcagaatctgttaagcatacgtgtgtg |
453 |
Q |
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| T |
40944961 |
accgagatgaggttcctgcagaatctgttatgcataagtgtgtg |
40945004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 40944597 - 40944681
Alignment:
| Q |
53 |
gataacaaggtctctaaattttatcgtgttattatacaaagcaacatatgttgtgaagtagatcgatctgcattgatgttataaa |
137 |
Q |
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| T |
40944597 |
gataacaaggtttccaaattttgtcgcattgttatataatgcaacatatgttgtgaagcagattgatcagctttgacgttataaa |
40944681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 451
Target Start/End: Complemental strand, 22508414 - 22508205
Alignment:
| Q |
243 |
tttcaattttctgatt-ccggagatgtttttctgtcaggacattacacaatccccgaatgacaccttaatgatcacagggcagtggttttaccgtccata |
341 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||||||| |||||||| || | | ||| | ||||||| ||| |||||||||||| | |
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| T |
22508414 |
tttcgattttctgattgccggctatgtttttctgtcaggacattgaacaatccctaaaagggaacttgaagatcacaacgcatcttttttaccgtccaga |
22508315 |
T |
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| Q |
342 |
tgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaag |
441 |
Q |
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| T |
22508314 |
tgaagcagaaagaaggagaggtcatacctggaaatcgaagatcaagagagagttattttatagtttccaccaatatgttgttccggcagaaaatgttatg |
22508215 |
T |
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| Q |
442 |
catacgtgtg |
451 |
Q |
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| T |
22508214 |
catacatgtg |
22508205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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