View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7235_high_6 (Length: 279)
Name: NF7235_high_6
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 5331927 - 5331671
Alignment:
| Q |
23 |
ctggtggacgatggtagtcatttcctctttggcagcttcactcgtctattggtattcaatggtgaaccttaataaagtctataggccgccttttacgtaa |
122 |
Q |
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| T |
5331927 |
ctggtggacgatggtagtcatttcctctttggcagcttcactcgtctattggtattcaatggtgaaccttaataaagtctataggccgcccgttacgtaa |
5331828 |
T |
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| Q |
123 |
cttaactctcaagaaaagcactagtagaccgtaggtatgacttaagcctatgagaaaagtcgaatcttacaagactattcattcagcgtgagagtttcgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5331827 |
cttaactctcaagaaaagcactagtagaccgtagttatgacttaagcctatgagaaaagtcgaatcttacaagactattcatttagcgtgagagtttcgt |
5331728 |
T |
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| Q |
223 |
gacttacttttggtaaatctccaatccgaatggcatcacgagggcaattgtgtggac |
279 |
Q |
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| T |
5331727 |
gacttacttttggtaaatctccaatccgaatggcatcacgagggcaattgtgtggac |
5331671 |
T |
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