View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7235_low_1 (Length: 726)
Name: NF7235_low_1
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 5397142 - 5396587
Alignment:
| Q |
1 |
ccaggccccagctaagcatggcatcttcatttgtttgccttcaaataaactaaccatatgatcaagtgaaaggnnnnnnnn-ttaatgtctattacgagg |
99 |
Q |
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| T |
5397142 |
ccaggccccagctaagcatggcatcttcatttgtttgccttcaaataaactaaccatatgatcaagtgaaagcaaaaaaaaattaatgtctattacgagg |
5397043 |
T |
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| Q |
100 |
atttaaaaatttgcaaccccatgatcacgtgtgtaggtgcaaatctttgnnnnnnnn--aaaagtcaagctatccaatttaaattgacatcgaaaagaat |
197 |
Q |
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| T |
5397042 |
atttaaaaatttgcaaccccatgatcacgtgtgtaggtgcaaatctttgttttttttttaaaagtcaagctatccaatccaaattgacatcgaaaagaat |
5396943 |
T |
|
| Q |
198 |
cgaacctaaatccttaagaggagcgcaaactttcaagccaaccctaaaaggacagtccaagtgggttgcgttggactaaatcttaaatagaaagatttga |
297 |
Q |
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| T |
5396942 |
cgaacctaaatctttaagaggagcgcaaattttcaagccaacgctaaaaggccagtccaagtgggttgcgtcggaccaaatcttaaatagaaagatttga |
5396843 |
T |
|
| Q |
298 |
attggaaaaaatcgctcacatggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaannnnnnnatgattaaccaagtaactaactaactatt |
397 |
Q |
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| T |
5396842 |
attggaaaaaatcactcacatggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaatttttttctgattaac----taagtaactaaatatt |
5396747 |
T |
|
| Q |
398 |
gaagtgcaagagttttctcctctcatgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttat |
497 |
Q |
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| T |
5396746 |
gaagtgcaagagttttcttctctcatgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttat |
5396647 |
T |
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| Q |
498 |
actatgaatgtcttcactcgtttggaaacaaacatatcaaacatctacctatctaactca |
557 |
Q |
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| T |
5396646 |
actatgaatgtcttcactcgtttggaaacaaacatatcaaacatctacctatctaactca |
5396587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 607 - 664
Target Start/End: Complemental strand, 5396537 - 5396480
Alignment:
| Q |
607 |
tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt |
664 |
Q |
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| T |
5396537 |
tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt |
5396480 |
T |
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