View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7235_low_2 (Length: 503)

Name: NF7235_low_2
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7235_low_2
NF7235_low_2
[»] chr4 (1 HSPs)
chr4 (20-487)||(38877319-38877786)
[»] chr8 (19 HSPs)
chr8 (223-362)||(16616938-16617077)
chr8 (370-500)||(16791575-16791705)
chr8 (230-352)||(16628648-16628770)
chr8 (230-352)||(16637529-16637651)
chr8 (370-500)||(16790169-16790299)
chr8 (360-498)||(16616778-16616916)
chr8 (361-500)||(16792415-16792554)
chr8 (360-469)||(16628507-16628616)
chr8 (360-469)||(16637388-16637497)
chr8 (361-487)||(16790515-16790642)
chr8 (227-344)||(16790682-16790799)
chr8 (227-344)||(16792594-16792711)
chr8 (22-75)||(16617254-16617307)
chr8 (23-65)||(15110407-15110449)
chr8 (126-171)||(16617143-16617188)
chr8 (24-65)||(16790986-16791027)
chr8 (282-353)||(16791464-16791534)
chr8 (287-353)||(16790062-16790128)
chr8 (22-63)||(16792900-16792941)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Complemental strand, 38877786 - 38877319
Alignment:
Q  20 actcccacaggatggaaaatgcctcacagctttgttgcaaccacctatgatattcccatgcatgatgctttcaatcagttcgctgactctgcagaagctg 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877786 actcccacagcatggaaaatgcctcacagctttgttgcaaccacctatgatattcccatgcatgatgctttcaatcagttcgctgactctgcagaagctg 38877687  T
Q  120 acttgaattcatccacaatgaaaggaaaatgccctcaaactgtggtaatcttannnnnnnnncttgccattcaaatctactagaagagtataccgttatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          | | ||||||||||||||||||||||||||||||||||    
T  38877686 acttgaattcatccacaatgaaaggaaaatgccctcaaactgtggtaatctttttttttcttcctaccattcaaatctactagaagagtataccgttatc 38877587  T
Q  220 ttgttacaagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaa 319  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  38877586 ttgttacaagaattttactgacacattgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactgtga 38877487  T
Q  320 ggtggttatcgctgaacaggaaaatgttgaaagtacagttggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcac 419  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38877486 ggtggttatcgctgaacaggaaaatgttgaaagtgcagttggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcac 38877387  T
Q  420 ttgacatatgataaaaaggtgaatgattttatatgctgttttgaactattcacattaattattttgat 487  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  38877386 ttgacatatgataaaaaggtgaatggttttatattctgttttgaactattcacattaattattttgat 38877319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 223 - 362
Target Start/End: Complemental strand, 16617077 - 16616938
Alignment:
Q  223 ttacaagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggt 322  Q
    ||||||||||||||||| ||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||  | ||||    
T  16617077 ttacaagaattttactgtcacattgttaactgtagcaggaaaatcagaatattttagcagaaataaaagacattaacaatcgattgttcgacagtgaggt 16616978  T
Q  323 ggttatcgctgaacaggaaaatgttgaaagtacagttgga 362  Q
    |||||||||| || |||||| ||||||||||  |||||||    
T  16616977 ggttatcgctaaaaaggaaattgttgaaagtgtagttgga 16616938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 370 - 500
Target Start/End: Original strand, 16791575 - 16791705
Alignment:
Q  370 ttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttttgaactatt 469  Q
    ||||||||||||||| |||||||||||| |||||| ||| |||||||||||| || |||||||||||||| | ||||||||||| || |||| |||||||    
T  16791575 ttaaaatcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgattttatattctattttcaactatt 16791674  T
Q  470 cacattaattattttgatgtccatctcattg 500  Q
      |||| ||||||||||| | ||||||||||    
T  16791675 tgcattgattattttgattttcatctcattg 16791705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 16628770 - 16628648
Alignment:
Q  230 aattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggttatc 329  Q
    ||||||| || ||| ||||| |||||||||| ||| ||||||  ||||||||||||||||||||||||| |||| |||||| |||| | |||||||||||    
T  16628770 aattttattgtcacattgttgactctagcaggaaattcagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatc 16628671  T
Q  330 gctgaacaggaaaatgttgaaag 352  Q
    | |||| ||||||||||||||||    
T  16628670 ggtgaaaaggaaaatgttgaaag 16628648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 16637651 - 16637529
Alignment:
Q  230 aattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggttatc 329  Q
    ||||||| || ||| ||||| |||||||||| ||| ||||||  ||||||||||||||||||||||||| |||| |||||| |||| | |||||||||||    
T  16637651 aattttattgtcacattgttgactctagcaggaaattcagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatc 16637552  T
Q  330 gctgaacaggaaaatgttgaaag 352  Q
    | |||| ||||||||||||||||    
T  16637551 ggtgaaaaggaaaatgttgaaag 16637529  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 500
Target Start/End: Original strand, 16790169 - 16790299
Alignment:
Q  370 ttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttttgaactatt 469  Q
    ||||||||||||||| ||||||||||||  ||||| |||||||||||||||| || |||||||||||||| |||| |||||||| || |||| |||||||    
T  16790169 ttaaaatcatgtacaatgcagtgactatcgatcagaaccttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaactatt 16790268  T
Q  470 cacattaattattttgatgtccatctcattg 500  Q
      |||| | ||||||||| | ||||||||||    
T  16790269 tgcattgaatattttgattttcatctcattg 16790299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 16616916 - 16616778
Alignment:
Q  360 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 459  Q
    ||||||||| | ||||| ||||||| ||||||| |||| |||||  |||||||||||||||| || | |||||||||||| ||||||||||||| |||||    
T  16616916 ggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgtt 16616817  T
Q  460 ttgaactattcacattaattattttgatgtccatctcat 498  Q
    ||||| ||||  |||| |  |||||||| | ||||||||    
T  16616816 ttgaattatttgcattgaccattttgattttcatctcat 16616778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 500
Target Start/End: Complemental strand, 16792554 - 16792415
Alignment:
Q  361 gattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttt 460  Q
    |||||||| ||||||||||||||| |||| ||||||| |||||   || |||||||||||| |  | ||||||||| || |||||||||||||  |||||    
T  16792554 gattacttgttaaaatcatgtacattgcaatgactatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatattatgttt 16792455  T
Q  461 tgaactattcacattaattattttgatgtccatctcattg 500  Q
    | || |||||||||| ||||||||||| | ||| ||||||    
T  16792454 tcaattattcacattgattattttgattttcatttcattg 16792415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 16628616 - 16628507
Alignment:
Q  360 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 459  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||  |||||||||||||||| || |  ||||||||||| |||| |||||||| |||||    
T  16628616 ggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtt 16628517  T
Q  460 ttgaactatt 469  Q
    | ||| ||||    
T  16628516 tggaattatt 16628507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 16637497 - 16637388
Alignment:
Q  360 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 459  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||  |||||||||||||||| || |  ||||||||||| |||| |||||||| |||||    
T  16637497 ggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtt 16637398  T
Q  460 ttgaactatt 469  Q
    | ||| ||||    
T  16637397 tggaattatt 16637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 487
Target Start/End: Complemental strand, 16790642 - 16790515
Alignment:
Q  361 gattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaag-gtgaatgattttatatgctgtt 459  Q
    |||||||| ||||||||||||||| |||| ||||||| |||||   || ||||||||| || || | |||||||||  || |||||||||||||  | ||    
T  16790642 gattacttgttaaaatcatgtacaatgcaatgactatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatattatctt 16790543  T
Q  460 ttgaactattcacattaattattttgat 487  Q
    |||||||||||||||| |||||||||||    
T  16790542 ttgaactattcacattgattattttgat 16790515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 16790799 - 16790682
Alignment:
Q  227 aagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggtt 326  Q
    ||||| ||| ||| ||| |||||||||||| ||  ||||||||||  |||||||| |||||| ||||||||||||||||||||| |||  | ||||||||    
T  16790799 aagaactttcctgtcacattgttaactctatcattaaaatcagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaatgaggtggtt 16790700  T
Q  327 atcgctgaacaggaaaat 344  Q
    |||| ||||  |||||||    
T  16790699 atcgttgaaagggaaaat 16790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 16792711 - 16792594
Alignment:
Q  227 aagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggtt 326  Q
    ||||| |||| || ||| |||||||||||| ||  ||||||||||  |||||||| | |||| ||||||||||||||||||||| |||  | ||||||||    
T  16792711 aagaactttaatgtcacattgttaactctaacatgaaaatcagaatcttttagcaaatataatagacataaacaatcaattgtttgacaatgaggtggtt 16792612  T
Q  327 atcgctgaacaggaaaat 344  Q
    |||| |||| ||||||||    
T  16792611 atcgttgaaaaggaaaat 16792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 16617307 - 16617254
Alignment:
Q  22 tcccacaggatggaaaatgcctcacagctttgttgcaaccacctatgatattcc 75  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||    
T  16617307 tcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttgatactcc 16617254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 15110407 - 15110449
Alignment:
Q  23 cccacaggatggaaaatgcctcacagctttgttgcaaccacct 65  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  15110407 cccacaggatggaaaatgcatcgcagctttgttgcaaccacct 15110449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 16617188 - 16617143
Alignment:
Q  126 attcatccacaatgaaaggaaaatgccctcaaactgtggtaatctt 171  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  16617188 attcattcacaatgaaaggaaaatgccctccagctgtggtaatctt 16617143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 16791027 - 16790986
Alignment:
Q  24 ccacaggatggaaaatgcctcacagctttgttgcaaccacct 65  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  16791027 ccacaggatagaaaatgcctcgcagctttgttgcaaccacct 16790986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 16791464 - 16791534
Alignment:
Q  282 gaaataaaagacataaacaatcaattgttcgactttaaggtggttatcgctgaacaggaaaatgttgaaagt 353  Q
    ||||||||| |||||||||||| ||| | ||||| | || |||||||||||||| |||||||| ||||||||    
T  16791464 gaaataaaaaacataaacaatcgattct-cgactatgagatggttatcgctgaaaaggaaaatattgaaagt 16791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 16790062 - 16790128
Alignment:
Q  287 aaaagacataaacaatcaattgttcgactttaaggtggttatcgctgaacaggaaaatgttgaaagt 353  Q
    |||| |||||||| ||| |||||| |||| | || ||||||| |||||| |||||||||||||||||    
T  16790062 aaaaaacataaacgatcgattgtttgactatgagatggttattgctgaaaaggaaaatgttgaaagt 16790128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 16792941 - 16792900
Alignment:
Q  22 tcccacaggatggaaaatgcctcacagctttgttgcaaccac 63  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||    
T  16792941 tcccacaggatggaaaaagcctcgcagcttttttgcaaccac 16792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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