View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7235_low_4 (Length: 426)
Name: NF7235_low_4
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 26722138 - 26721744
Alignment:
| Q |
8 |
gagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgga |
107 |
Q |
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| T |
26722138 |
gagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgga |
26722039 |
T |
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| Q |
108 |
aattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcaga |
207 |
Q |
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| T |
26722038 |
aattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgtaga |
26721939 |
T |
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| Q |
208 |
acctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagt |
307 |
Q |
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| T |
26721938 |
acctataaagtgtagatagaaacaatctcgttatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaagtgagt |
26721844 |
T |
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| Q |
308 |
ttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttc |
407 |
Q |
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| T |
26721843 |
ttgtttttcccaatcactttgggaacatgctcttcaaaagagagtgataagcctctaacattccttgaaaggatagcagcgacaacaccattcatccttc |
26721744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 45116784 - 45117165
Alignment:
| Q |
8 |
gagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgga |
107 |
Q |
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| T |
45116784 |
gagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgga |
45116883 |
T |
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| Q |
108 |
aattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcaga |
207 |
Q |
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| T |
45116884 |
aattacacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcaga |
45116970 |
T |
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| Q |
208 |
acctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagt |
307 |
Q |
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| T |
45116971 |
acctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaagtgaat |
45117065 |
T |
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| Q |
308 |
ttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttc |
407 |
Q |
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| T |
45117066 |
ttgatgttcccaatcactttgggagcatgctcttaaaaagagagtgatgagcctcttacattccttgaaaggatggcagcgacaacacctttcatccttc |
45117165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 2987594 - 2987212
Alignment:
| Q |
8 |
gagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgga |
107 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2987594 |
gagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatgga |
2987495 |
T |
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| Q |
108 |
aattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcaga |
207 |
Q |
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| T |
2987494 |
aattacacaacaaatagagtattaaaccattttctcaaat-------------cataatccaaggctcatggtttttcttctttgaaccatatttgcaga |
2987408 |
T |
|
| Q |
208 |
acctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagt |
307 |
Q |
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| T |
2987407 |
acctataaagtatagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat----aaaaaaaaagtgaat |
2987312 |
T |
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| Q |
308 |
ttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcatccttc |
407 |
Q |
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| T |
2987311 |
ttgatgttcccaatcactttgggaacatgctcttaaaaagagagtgataagcctcttacattccttgaaaggatggcagcgacaacacctttcatccttc |
2987212 |
T |
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