View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7235_low_5 (Length: 335)
Name: NF7235_low_5
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 5331694 - 5331403
Alignment:
| Q |
19 |
catcacgagggcaattgtgtggactgtagctgtagtttggtggccctgagaaagggttacaaattttcacgagtccaattaattcttcattttcttcacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331694 |
catcacgagggcaattgtgtggactgtagctgtagtttggtggccctgagaaagggttacaaattttcacgagtccaattaattcttcattttcttcacc |
5331595 |
T |
|
| Q |
119 |
tattcctagcagctgatacatgagtgatacgtcagaattcaactgagacacaaacaaaccattatatcagaaactatcaaacaattgtatgcatttcctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331594 |
tattcctagcagctgatacatgagtgatacgtcagaattcaactgagacacaaacaaaccattatatcagaaactatcaaacaattgtatgcatttcctt |
5331495 |
T |
|
| Q |
219 |
ttgaataggtgaatgacnnnnnnnnnnnttgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttccagagaatga |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331494 |
ttgaataggtgaatgac--aaaaaaaaattgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttccagagaatga |
5331403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University