View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7235_low_6 (Length: 330)
Name: NF7235_low_6
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7235_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 42265198 - 42265020
Alignment:
| Q |
20 |
catgttaaccatctacagtttcaatataataataaaggagctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcga |
115 |
Q |
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| T |
42265198 |
catgttaaccatctacggtttcaatataataataaaggagccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaa |
42265099 |
T |
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| Q |
116 |
atatcataaccgcagtaacctattatctcaaacttccccttaaactcatgatccaataacactaggcatcaagagtttgt |
195 |
Q |
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| T |
42265098 |
atatcataaccgcagtaacctattatct-aaacttccccttaaactcatgatccaataacactaggcatcaagagtttgt |
42265020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 42264950 - 42264898
Alignment:
| Q |
265 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgt |
317 |
Q |
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| T |
42264950 |
caacttactgtgatgcaaaagacttgacctcgtcattattcagaatctgatgt |
42264898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 12861010 - 12861063
Alignment:
| Q |
265 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtc |
318 |
Q |
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| T |
12861010 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtc |
12861063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 16653697 - 16653750
Alignment:
| Q |
265 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtc |
318 |
Q |
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| T |
16653697 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtc |
16653750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 17628057 - 17628110
Alignment:
| Q |
265 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtc |
318 |
Q |
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| T |
17628057 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtc |
17628110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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