View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7235_low_9 (Length: 249)

Name: NF7235_low_9
Description: NF7235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7235_low_9
NF7235_low_9
[»] chr1 (20 HSPs)
chr1 (19-238)||(38175588-38175807)
chr1 (157-238)||(28366257-28366338)
chr1 (182-238)||(14654398-14654454)
chr1 (182-238)||(14664189-14664245)
chr1 (182-238)||(14669767-14669823)
chr1 (182-238)||(14676625-14676681)
chr1 (182-238)||(14683743-14683799)
chr1 (182-238)||(14706081-14706137)
chr1 (182-238)||(14708571-14708627)
chr1 (182-238)||(14716284-14716340)
chr1 (182-238)||(33988063-33988119)
chr1 (185-238)||(14674477-14674530)
chr1 (185-238)||(14679855-14679908)
chr1 (186-238)||(14667169-14667221)
chr1 (182-238)||(14681592-14681648)
chr1 (189-238)||(14652525-14652574)
chr1 (189-238)||(14662316-14662365)
chr1 (192-238)||(11872539-11872585)
chr1 (195-238)||(37422175-37422218)
chr1 (185-230)||(28698549-28698594)
[»] chr4 (11 HSPs)
chr4 (80-238)||(49106587-49106745)
chr4 (81-238)||(49108691-49108848)
chr4 (97-238)||(50077257-50077397)
chr4 (80-238)||(49533684-49533840)
chr4 (182-238)||(3461200-3461256)
chr4 (186-238)||(11652450-11652502)
chr4 (190-238)||(26984725-26984773)
chr4 (190-238)||(26998798-26998846)
chr4 (190-238)||(48205832-48205880)
chr4 (196-235)||(26982549-26982588)
chr4 (194-230)||(34481155-34481191)
[»] chr8 (11 HSPs)
chr8 (19-238)||(40054152-40054361)
chr8 (182-238)||(41841210-41841266)
chr8 (183-238)||(44878977-44879032)
chr8 (183-238)||(44880889-44880944)
chr8 (186-238)||(10944457-10944509)
chr8 (191-238)||(37679757-37679804)
chr8 (181-232)||(42872514-42872565)
chr8 (189-238)||(37682057-37682106)
chr8 (157-232)||(42220909-42220984)
chr8 (182-235)||(42555144-42555197)
chr8 (206-238)||(44582870-44582902)
[»] chr5 (4 HSPs)
chr5 (19-238)||(7524816-7525017)
chr5 (157-238)||(3643608-3643689)
chr5 (186-238)||(1716510-1716562)
chr5 (193-238)||(4103249-4103294)
[»] chr6 (4 HSPs)
chr6 (97-238)||(10795948-10796088)
chr6 (97-238)||(10791710-10791850)
chr6 (189-238)||(30521242-30521291)
chr6 (191-238)||(8875691-8875738)
[»] chr2 (20 HSPs)
chr2 (34-238)||(43849905-43850098)
chr2 (182-238)||(8973305-8973361)
chr2 (182-238)||(8979315-8979371)
chr2 (182-238)||(9023440-9023496)
chr2 (182-238)||(9026779-9026835)
chr2 (182-238)||(30732001-30732057)
chr2 (183-238)||(32918074-32918129)
chr2 (182-238)||(8984686-8984742)
chr2 (186-238)||(9008018-9008070)
chr2 (182-238)||(9032046-9032102)
chr2 (188-238)||(2841075-2841125)
chr2 (182-238)||(9020840-9020896)
chr2 (186-238)||(30733985-30734037)
chr2 (182-238)||(9030391-9030447)
chr2 (191-238)||(19232457-19232504)
chr2 (182-238)||(8988448-8988504)
chr2 (186-238)||(8992145-8992197)
chr2 (186-238)||(9016490-9016542)
chr2 (192-227)||(39814115-39814150)
chr2 (196-238)||(10763936-10763978)
[»] chr3 (1 HSPs)
chr3 (191-237)||(15758562-15758608)
[»] chr7 (1 HSPs)
chr7 (189-238)||(27134511-27134560)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 38175807 - 38175588
Alignment:
Q  19 atcacgttaaaaatttaagggaaacgaaacttagcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtccc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175807 atcacgttaaaaatttaagggaaacgaaacttagcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtccc 38175708  T
Q  119 acatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagat 218  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  38175707 acatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggcttcatttcaactcatacctttctcggccttttggctaagat 38175608  T
Q  219 caagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||    
T  38175607 caagtgtagtatctgttctt 38175588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 28366338 - 28366257
Alignment:
Q  157 atataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||  |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 28366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 14654454 - 14654398
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654454 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14654398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 14664245 - 14664189
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664245 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14664189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 14669823 - 14669767
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669823 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14669767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14676625 - 14676681
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14676681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14683743 - 14683799
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14683799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14706081 - 14706137
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706081 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14708571 - 14708627
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708571 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14708627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14716284 - 14716340
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716284 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14716340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 33988063 - 33988119
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988063 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 33988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 14674477 - 14674530
Alignment:
Q  185 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674477 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14674530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 14679855 - 14679908
Alignment:
Q  185 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679855 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14679908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 14667221 - 14667169
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14667169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14681592 - 14681648
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14681648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 14652525 - 14652574
Alignment:
Q  189 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14652574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 14662316 - 14662365
Alignment:
Q  189 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 14662365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 11872585 - 11872539
Alignment:
Q  192 tacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttctt 11872539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 37422175 - 37422218
Alignment:
Q  195 ctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttctt 37422218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  185 caactcatacctttctcggccttttggctaagatcaagtgtagtat 230  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 49106745 - 49106587
Alignment:
Q  80 gtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagactt 179  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || || ||  ||||||||||||| || || |      
T  49106745 gtaagagtcagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccac 49106646  T
Q  180 cgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106645 cctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 49106587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 49108848 - 49108691
Alignment:
Q  81 taagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagacttc 180  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | || || ||  |||||||| |||| || || ||      
T  49108848 taagagtcagtcacaaggtggtactgcatataagtcccacatcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagccagcctat 49108749  T
Q  181 gtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108748 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 49108691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 50077397 - 50077257
Alignment:
Q  97 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgaga-cttcgtttcaactcatacc 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||  ||||||||||||| || ||  |||| ||||||||||||||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagtg-acagttgatataaaagcagaagccagctcttc-tttcaactcatacc 50077300  T
Q  196 tttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50077299 tttctcggccttttggctaagatcaagtgtagtatctgttctt 50077257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 49533840 - 49533684
Alignment:
Q  80 gtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagactt 179  Q
    ||||||||| |||||||  |||||||||||| |||||||||||||| ||||||||||||||||| | || || ||  |||||||| |||| || || | |    
T  49533840 gtaagagtcagtcacaaaatggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattagacagttgatataaaaccagaagccagccct 49533741  T
Q  180 cgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
      || |||| ||||||||||||||||  ||||||||||||||||| | |||||||||||    
T  49533740 tattccaacccatacctttctcggcc-cttggctaagatcaagtgca-tatctgttctt 49533684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 3461256 - 3461200
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461256 tttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 3461200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 11652502 - 11652450
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652502 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 11652450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 26984773 - 26984725
Alignment:
Q  190 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 26984725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 26998846 - 26998798
Alignment:
Q  190 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 26998798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 48205832 - 48205880
Alignment:
Q  190 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttctt 48205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  196 tttctcggccttttggctaagatcaagtgtagtatctgtt 235  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  194 cctttctcggccttttggctaagatcaagtgtagtat 230  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 40054152 - 40054361
Alignment:
Q  19 atcacgttaaaaatttaagggaaacgaaacttagcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtccc 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  |||          | ||||||  ||||||||| |||||||    
T  40054152 atcacgttaaaaatataagggaaacgaaacttagcagcagataaacgggaatggtgtaatagt----------cccaaggtactactgcataaaagtccc 40054241  T
Q  119 acatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagat 218  Q
    ||||||  |||||||||||| |||| |||| ||  || ||||||||| ||||||||| | || ||| || ||||||||||||||||||||||||||||||    
T  40054242 acatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaattcatacctttctcggccttttggctaagat 40054341  T
Q  219 caagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||    
T  40054342 caagtgtagtatctgttctt 40054361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 41841266 - 41841210
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841266 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 41841210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 44878977 - 44879032
Alignment:
Q  183 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 44879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 44880944 - 44880889
Alignment:
Q  183 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 44880889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 10944509 - 10944457
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttctt 10944457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 37679757 - 37679804
Alignment:
Q  191 atacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttctt 37679804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 42872565 - 42872514
Alignment:
Q  181 gtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 232  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872565 gtttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 37682057 - 37682106
Alignment:
Q  189 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttctt 37682106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 42220984 - 42220909
Alignment:
Q  157 atataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 232  Q
    ||||||||||||| |||||  |   ||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220984 atataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 42555197 - 42555144
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 235  Q
    ||||||||||||||||||| |  |||||||||||||||||||| || |||||||    
T  42555197 tttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtt 42555144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 44582870 - 44582902
Alignment:
Q  206 ttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttctt 44582902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 7524816 - 7525017
Alignment:
Q  19 atcacgttaaaaatttaagggaaacgaaacttagcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtccc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||                 ||||| ||||||| |||||||    
T  7524816 atcacgttaaaaatttaagggaaacgaaacttagcagcagataaacggaagtggtgtgtaag-----------------gtggtgctgcataaaagtccc 7524898  T
Q  119 acatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagat 218  Q
    |||||||||||||||||||  |||| |||| || ||| ||||||||||| |||| ||   | ||||||| ||||||||||||||||||||||||||||||    
T  7524899 acatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatacctttctcggccttttggctaagat 7524997  T
Q  219 caagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||    
T  7524998 caagtgtagtatctgttctt 7525017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 3643608 - 3643689
Alignment:
Q  157 atataaaagcagatgcgagacttcgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||| |||| |||||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643608 atataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 3643689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 1716562 - 1716510
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 1716510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 4103249 - 4103294
Alignment:
Q  193 acctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttctt 4103294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 10796088 - 10795948
Alignment:
Q  97 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgaga-cttcgtttcaactcatacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  || ||  ||||||||||||| || ||  |||| ||||||||||||||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagtg-acagttgatataaaagcagaagccagctcttc-tttcaactcatacc 10795991  T
Q  196 tttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10795990 tttctcggccttttggctaagatcaagtgtagtatctgttctt 10795948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 10791850 - 10791710
Alignment:
Q  97 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatactgtgcatataaaagcagatgcgaga-cttcgtttcaactcatacc 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||  ||||||||||||| || |   |||| ||||||||||||||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagtg-acagttgatataaaagcagaagccaactcttc-tttcaactcatacc 10791753  T
Q  196 tttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10791752 tttctcggccttttggctaagatcaagtgtagtatctgttctt 10791710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 30521242 - 30521291
Alignment:
Q  189 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttctt 30521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 8875691 - 8875738
Alignment:
Q  191 atacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttctt 8875738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 43849905 - 43850098
Alignment:
Q  34 taagggaaacgaaacttagcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaa 133  Q
    ||||||| |||||||||||||||||||| | |||||  ||||    |||||||||     ||||||| |||||||||   ||||||||||||||||| ||    
T  43849905 taagggatacgaaacttagcagcagatatatgggagcagtgt----gtaagagtcc----caaggtgctactgcata---gtcccacatcgggtaatcaa 43849993  T
Q  134 gaaagaaactaagtatactgtgcatataaaagcagatgcg-agacttcgtttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 232  Q
    ||||| | || |||| || | | ||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849994 gaaaggatctgagtagacagaggatataaaagcagatgcgtagcctta-tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 43850092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 8973305 - 8973361
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973305 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 8973361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 8979315 - 8979371
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979315 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 8979371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 9023440 - 9023496
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023440 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9023496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 9026779 - 9026835
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026779 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9026835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 30732001 - 30732057
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732001 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 30732057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 32918074 - 32918129
Alignment:
Q  183 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 32918129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 8984686 - 8984742
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttctt 8984742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 9008018 - 9008070
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9008070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 9032046 - 9032102
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9032046 tttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 9032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2841125 - 2841075
Alignment:
Q  188 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 2841075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 9020840 - 9020896
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9020840 tttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttctt 9020896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 30733985 - 30734037
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 30734037  T

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Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 9030391 - 9030447
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  9030391 tttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttctt 9030447  T

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Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 19232504 - 19232457
Alignment:
Q  191 atacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttctt 19232457  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 8988448 - 8988504
Alignment:
Q  182 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||    
T  8988448 tttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttctt 8988504  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 8992145 - 8992197
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| |||||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttctt 8992197  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 9016490 - 9016542
Alignment:
Q  186 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    ||||||||||||  ||| |||||||||||||||||| ||||||||||||||||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctgttctt 9016542  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  192 tacctttctcggccttttggctaagatcaagtgtag 227  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 10763978 - 10763936
Alignment:
Q  196 tttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||| |||||| ||||||||||||||||||| |||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttctt 10763936  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  191 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 237  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 27134511 - 27134560
Alignment:
Q  189 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 238  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttctt 27134560  T

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