View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7236_high_10 (Length: 371)
Name: NF7236_high_10
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 14559893 - 14559558
Alignment:
| Q |
20 |
aatatttctattttcattggtcttcaatatctaggtacatattttgaaccaaataaaaacttacaaatctaaggtttaaggtttactgaaatacttcaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559893 |
aatatttctattttcattggtcttcaatatctaggtacatattttgaaccaaataaaaacttacaaatctaaggtttaaggtttactgaaatacttcaaa |
14559794 |
T |
|
| Q |
120 |
ttgaattattgttgttttaataaattgtgttcaactttgaggacaatgaactatgacaactgatgatttattttctttgattcaaggtaccaagccatgc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559793 |
ttgaattattgttgttttaataaattgtgttcaactttgaggacaatgaactatgacaactaatgatttattttctttgattcaaggtaccaagccatgc |
14559694 |
T |
|
| Q |
220 |
aatcagaccaaactacaaatagaaattgtgcaatgcagtttccagaaaagcataatcatcaagaagagatagctgacagattgaatgtaaggacttatta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559693 |
aatcagaccaaactacaaatagaaattgtgcaatgcagtttccagaaaagcataatcatcaagaagagatagctgacagattgaatgtaaggacttatta |
14559594 |
T |
|
| Q |
320 |
acctatatttgttgcctcatggcaatttccacacag |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559593 |
acctatatttgttgcctcatggcaatttccacacag |
14559558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University