View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_high_16 (Length: 246)
Name: NF7236_high_16
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28976767 - 28977003
Alignment:
| Q |
1 |
ttttctttcattatcttttgttgcaatgaacgttagtaagtcccttttcttatccttttcaaactctcttatttaccttacacataatatttcatcatct |
100 |
Q |
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| T |
28976767 |
ttttctttcattattttttgttgcaatgaacgttagtaagtcccttttcttatccttttcaaactctcttatttaccttacacataatatttcatcatct |
28976866 |
T |
|
| Q |
101 |
tttagtaacattccattatatttgtttcacattacagaatctcttgattgtcattctgaccatgaatgctataatcaacttagttgtatcatcgaggaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28976867 |
tttagtaacattccattatatttgtttcacattacagaatctcttgattgtcattctgaccatgaatgctataatcaacttagttgtatcatcgaggaga |
28976966 |
T |
|
| Q |
201 |
tatgtttggatggttcgtgtcattgccctccaatatt |
237 |
Q |
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| T |
28976967 |
tatgtttggatggttcgtgtcattgccctccaatatt |
28977003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 34849668 - 34849464
Alignment:
| Q |
29 |
aacgttagtaagtcccttttcttatccttttcaaactctcttatttaccttacacataatatttcatcatcttttagtaacattccattatatttgtttc |
128 |
Q |
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| T |
34849668 |
aacgttagtaagttccttttctcatccttttcaaactctcttatttaccttatacataatatttcatcattttttagtaacattccattatatttgtttc |
34849569 |
T |
|
| Q |
129 |
acattacagaatctcttgattgtcattctgaccatgaatgctataatcaacttagttgtatcatc---gaggagatatgtttggatggttcgtgtcattg |
225 |
Q |
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| T |
34849568 |
gcattacagaatcttttcattgccatatggactatgattgctatgatcaaattacttgtatcatcggagacgtgacatgtttagagggttcgtgtgattg |
34849469 |
T |
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| Q |
226 |
ccctc |
230 |
Q |
| |
|
||||| |
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| T |
34849468 |
ccctc |
34849464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 34843512 - 34843597
Alignment:
| Q |
52 |
atccttttcaaactctcttatttaccttacacataatatttcatcatcttttagtaacattccattatatttgtttcacattacag |
137 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||||| ||||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
34843512 |
atccttttcaaattctcttatttaccttatacacaatattttatcatcttttaataacattttattatacttgtttcacattacag |
34843597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 34859901 - 34859773
Alignment:
| Q |
1 |
ttttctttcattatcttttgttgcaatgaacgttagtaagtcccttttcttatccttttcaaactctcttatttaccttacacataatatttcatcatct |
100 |
Q |
| |
|
|||||||||| ||| | |||||| || |||||| ||||||||||||||| ||||||||||| |||||||||||||| ||| || |||| |
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| T |
34859901 |
ttttctttcactatttcttgttgtaacgaacgtgggtaagtcccttttctcatccttttcaagctctcttatttacc------------ttttataatct |
34859814 |
T |
|
| Q |
101 |
tttagtaacattccattatatttgtttcacattacagaatc |
141 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
34859813 |
attagtaacattctattatatttgtttcacattacagaatc |
34859773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 34863194 - 34863259
Alignment:
| Q |
76 |
ccttacacataatatttcat---catcttttagtaacattccattatatttgtttcacattacaga |
138 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
34863194 |
ccttaaacataatatttcatcatcatcttttagtaacattccattataattgtttaacattacaga |
34863259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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