View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7236_high_7 (Length: 410)
Name: NF7236_high_7
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 14598106 - 14598480
Alignment:
| Q |
18 |
caagtgccgggccaatgggtgccatcagccatccaagtggcctttaatactttaacaggctccaaagggtcagccccagtctccttcaaatgcttcatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598106 |
caagtgccgggccaatgggtgccatcagccatccaagtggccttcaatactttaacaggctccaaagggtcagccccagtctccttcaaatgcttcatca |
14598205 |
T |
|
| Q |
118 |
tcttcatttcctctcttgcattaaatgcatcagatcttctcctaatagaatcaggaaggccatttatgcgcactttgaactcatcgtactcccttttcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598206 |
tcttcatttcctctcttgcattaaatgcatcagatcttctcctaatagaatcaggaaggccatttatgcgcactttgaactcatcgtactcccttttcac |
14598305 |
T |
|
| Q |
218 |
ccttcttctgtccttcacgaaatccagtttactcttgttcttggttggatccatttttaacgcaaagtaagaatcaggattccttggctcaatattgtgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598306 |
ccttcttctgtccttcacgaaatccagtttactcttgttcttggttggatcgatttttaacgcaaagtaagaatcaggattccttggctcaatattgtgt |
14598405 |
T |
|
| Q |
318 |
ttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598406 |
ttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaactcaagagagctcct |
14598480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 367
Target Start/End: Complemental strand, 14610361 - 14610021
Alignment:
| Q |
27 |
ggccaatgggtgccatcagccatccaagtggcctttaatactttaacaggctccaaagggtcagccccagtctccttcaaatgcttcatcatcttcattt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||| || | ||||| |||| ||||||||| ||||||| || ||||||||| ||||||||| |
|
|
| T |
14610361 |
ggccaatgggtgccatcagccatccaggtagcctttattaccttgataggcttagaaggatcagccccactctccttgaattgcttcatcttcttcattt |
14610262 |
T |
|
| Q |
127 |
cctctcttgcattaaatgcatcagatcttctcctaatagaatcaggaaggccatttatgcgcactttgaactcatcgtactcccttttcacccttcttct |
226 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
14610261 |
cctcccttgcgttaaatgcatcagatcttctcctaattgactccggaaggccatttatacgcaccttgaactcatcatactccctcttcacccttcttct |
14610162 |
T |
|
| Q |
227 |
gtccttcacgaaatccagtttactcttgttcttggttggatccatttttaacgcaaagtaagaatcaggattccttggctcaatattgtgtttgcgacaa |
326 |
Q |
| |
|
|||||||| ||||| | | | ||||||||||| |||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14610161 |
atccttcacaaaatctaatctgctcttgttcttagttggatcgacatttgaggcaaagtaagaatcaggattccttggctcaatattgtgtttgcgacaa |
14610062 |
T |
|
| Q |
327 |
aagggaacccataaatcagcaaaacttgcggcctcagccat |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14610061 |
aagggaacccataaatcagcaaaacttgcagcctcagccat |
14610021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 41491819 - 41491889
Alignment:
| Q |
291 |
tcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctc |
361 |
Q |
| |
|
||||| |||||| | ||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
41491819 |
tcagggttccttaggtcaatgttgtgcttccgacaaaatggaacccacaaatcagcaaaacttgctgcctc |
41491889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 12194677 - 12194773
Alignment:
| Q |
281 |
aaagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataaatcagcaaaacttgcggcctcagccatcgcttcaaaa |
377 |
Q |
| |
|
||||||||| || || |||||||| ||||| | ||| || |||||||| |||||||| || || ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
12194677 |
aaagtaagattccgggttccttggttcaatgtcgtgcttccgacaaaaaggaacccacaactccgcaaaacttgctgcctcggccatggcctcaaaa |
12194773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 15419374 - 15419432
Alignment:
| Q |
282 |
aagtaagaatcaggattccttggctcaatattgtgtttgcgacaaaagggaacccataa |
340 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||||||| |||||||| || |||||||| |
|
|
| T |
15419374 |
aagtaagcatctggattccttggttcgatattgtgttttcgacaaaatggtacccataa |
15419432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University