View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_high_8 (Length: 389)
Name: NF7236_high_8
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 27831744 - 27832095
Alignment:
| Q |
23 |
gcacaagcaggttcctttattttgattcattactatctatatatttttccttccgagtaaacgtcattttggtctctgaatgtgtgtgatgccttgtcat |
122 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27831744 |
gcacaagtaggttcctttattttgattcattactatctatattttttt---tcctagtaaccgtcattttggtctctgaatgtgtgtgatgccttgtcat |
27831840 |
T |
|
| Q |
123 |
ttaagtctcttaatttgtcgaaattacatacatattctccaatgtttctttagttagtcattttgatcctcaaatttgtttttagttagtcattttggtt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27831841 |
ttaagtctcttaatttgtcgaaattacatacatattctccaatgtttctttagttagtcattttgatcctcaaatgtgtttttagttagtcattttggtt |
27831940 |
T |
|
| Q |
223 |
ctcaaatgtgtttttcgttactcaatttataccataaatggcaagtaaaaaacacaaaatggggatgtatttgcaattttgatatatgcagggactatat |
322 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27831941 |
ctcaaatgtgtttttctttactcaatttataccataaattgcaagtaaaaaacacaaaatggggatgtatttgcaattttgatatatgcagggactatat |
27832040 |
T |
|
| Q |
323 |
gataaccgcctacacattcagagactaaaatgactatttactcgtgactcatatt |
377 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27832041 |
gataactgcctacacattcagagactaaaatgactatttactcgttactcatatt |
27832095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 27827160 - 27827503
Alignment:
| Q |
19 |
cttagcacaagcaggttcctttattttgattcattactatctatatatttttccttccg-agtaaacgtcattttggtctctgaatgtgtgtgatgcctt |
117 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27827160 |
cttagcacaagtaggtttctttattttgattcattactatctatattttttt--ttccggagtaaacgtcattttggtctctgaatgtgtgtgatgcctt |
27827257 |
T |
|
| Q |
118 |
gtcatttaagtctcttaatttgtcgaaattacatacatattctccaatgtttctttagttagtcattttgatcctcaaatttgtttttagttagtcattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27827258 |
gtcatttaagtctcttaatttgtcgaaattacatgcatattctccaatgtttctttagttagtcattttgatcctcaaatgtgtttttagttagtcattt |
27827357 |
T |
|
| Q |
218 |
tggttctcaaatgtgtttttcgttactcaatttataccataaatggcaagtaaaaaacacaaaatggggatgtatttgcaattttgatatatgcagggac |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27827358 |
tggttctcaaatgtgtttttccttactcaatttataccataaattgcaagtaaaaaacacaaaatggggatgtatttgcaattttgata----------- |
27827446 |
T |
|
| Q |
318 |
tatatgataaccgcctacacattcagagactaaaatgactatttactcgtgactcatatt |
377 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
27827447 |
---atgataactgcctacacattcagagactaaaatgactatttacttgtgactcgtatt |
27827503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 6285061 - 6284993
Alignment:
| Q |
170 |
ctttagttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgtttttc |
238 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||| ||| ||| || |||||||| |||||||||||||||| |
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| T |
6285061 |
ctttagttagtcattttaatcctagaatatgtattttgtttgtaattttggtcctcaaatgtgtttttc |
6284993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 535788 - 535853
Alignment:
| Q |
176 |
ttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgtttttcgtt |
241 |
Q |
| |
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||||||| |||| |||||||||||||||| || ||||| | |||| |||||||||||||| |||| |
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| T |
535788 |
ttagtcactttggtcctcaaatttgttttaaggcagtcaatatggtcctcaaatgtgttttccgtt |
535853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 41462626 - 41462693
Alignment:
| Q |
184 |
tttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgtttttcgttactcaattta |
251 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| || ||| |||||||||||||||| |||||||| |
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|
| T |
41462626 |
tttgatcctcaaatgtgttttttgttagtcactttagtactccaatgtgtttttcgttagtcaattta |
41462693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 37437733 - 37437801
Alignment:
| Q |
169 |
tctttagttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgttttt |
237 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||| |||||||| |||||| ||||||||||||||| |
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| T |
37437733 |
tctttagtaagtcattttagtcctcaaatgtgtcttttgttagtcactttggtcctcaaatgtgttttt |
37437801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 41313490 - 41313551
Alignment:
| Q |
176 |
ttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgttttt |
237 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||| ||| ||| |||||| ||||||| |
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| T |
41313490 |
ttagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgttttt |
41313551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 6731311 - 6731220
Alignment:
| Q |
169 |
tctttagttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgtttttcgttactcaatttataccataaa |
260 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||| ||| |||||||||||| || ||||||||| | |||| ||| |||||||| ||||||| |
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| T |
6731311 |
tctttagttaaccattttgatcatcaaatgtgtcttttgttagtcattttagtcctcaaatgtatctttcattagtcaatttagtccataaa |
6731220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 11416774 - 11416688
Alignment:
| Q |
128 |
tctcttaatttgtcgaaattacatacatattctccaatgtttctttagttagtcattttgatcctcaaatttgtttttagttagtca |
214 |
Q |
| |
|
||||||| ||| || ||||| || ||||||| || ||||| |||||| ||| |||||||||||| ||||| ||||||| |||||||| |
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|
| T |
11416774 |
tctcttagtttttcaaaattgcaaacatattttcaaatgtctctttaattaatcattttgatccccaaatatgtttttggttagtca |
11416688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 4680881 - 4680821
Alignment:
| Q |
177 |
tagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgttttt |
237 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||| ||| ||| |||||| ||||||| |
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| T |
4680881 |
tagtcattttgattctcaaatttgcttttacgtagtcaatttagttttcaaatatgttttt |
4680821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 27772141 - 27772097
Alignment:
| Q |
193 |
caaatttgtttttagttagtcattttggttctcaaatgtgttttt |
237 |
Q |
| |
|
||||| ||| |||||||| |||||||||| ||||||||||||||| |
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|
| T |
27772141 |
caaatgtgtctttagttactcattttggtcctcaaatgtgttttt |
27772097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 53525670 - 53525729
Alignment:
| Q |
201 |
tttttagttagtcattttggttctcaaatgtgtttttcgttactcaatttataccataaa |
260 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||||||| |
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|
| T |
53525670 |
tttttagttggtcggtttggtcctcaaatgtgtttttcgttattcaatttagtccataaa |
53525729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 25009376 - 25009314
Alignment:
| Q |
176 |
ttagtcattttgatcctcaaatttgtttttagttagtcattttggttctcaaatgtgtttttc |
238 |
Q |
| |
|
|||||||||||| || |||||| | ||||||| |||||| ||| || |||||||||||||||| |
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|
| T |
25009376 |
ttagtcattttgctcatcaaatatatttttaggtagtcaatttagtcctcaaatgtgtttttc |
25009314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 32854596 - 32854641
Alignment:
| Q |
206 |
agttagtcattttggttctcaaatgtgtttttcgttactcaattta |
251 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | || |||||||| |
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|
| T |
32854596 |
agttagtcattttggtcctcaaatgtgttttttgctagtcaattta |
32854641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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