View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_12 (Length: 280)
Name: NF7236_low_12
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 39521325 - 39521574
Alignment:
| Q |
22 |
gattagttacataactgtcatctggtaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttc |
121 |
Q |
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| T |
39521325 |
gattagttacataactgtcatctgctaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttc |
39521424 |
T |
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| Q |
122 |
caacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatga |
221 |
Q |
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| T |
39521425 |
caacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccagtagaaccgatgtaattgaaacgtgctactgaatcggggattaaatga |
39521524 |
T |
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| Q |
222 |
agagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgt |
271 |
Q |
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| T |
39521525 |
agagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgt |
39521574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 39575964 - 39576219
Alignment:
| Q |
19 |
gtagattagttacataactgtcatctggtaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggt |
118 |
Q |
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| T |
39575964 |
gtagattagttacatatctgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccgacgttaaaacgatgttttgt |
39576063 |
T |
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| Q |
119 |
ttccaacgatcgttgtgagtgtaaaccgccactataagtagttaag---ccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggatt |
215 |
Q |
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| T |
39576064 |
ttccaaggctcgttgtgagtgtaaaccgccaatataagtagataagcctcctcgaacaccagattctttgtaagagaaatgtggcattgaatcagggatt |
39576163 |
T |
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| Q |
216 |
aaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgt |
271 |
Q |
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| T |
39576164 |
aaatgaaccggaagcataaagagttctattgcattaacaaacgcaaatgatgatgt |
39576219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 39544121 - 39544367
Alignment:
| Q |
22 |
gattagttacataactgtcatctggtaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttc |
121 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||| || ||||||| || ||||||| |
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| T |
39544121 |
gattagttatataactgtcatctggtaaccattctctcgataaagtatcggtttttctatcgacagttccgctaccaacattaagaccaaggatggtttc |
39544220 |
T |
|
| Q |
122 |
caacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatga |
221 |
Q |
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| T |
39544221 |
caacgat---tgagagaggaaatcattactataagtagttaagtttcgaatggcagaatcaatgtaattgaaacgagctattgaattgggtattaaatga |
39544317 |
T |
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| Q |
222 |
agagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgt |
271 |
Q |
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| T |
39544318 |
agagggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgt |
39544367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 39511079 - 39511326
Alignment:
| Q |
22 |
gattagttacataactgtcatctggtaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttc |
121 |
Q |
| |
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||||||||| || ||||||||| ||||||||||||| ||||||||||||| | ||||| |||| | | | || ||||||||||| |||| ||||| |
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| T |
39511079 |
gattagttatgtatctgtcatctcgtaaccattctcttgataatgtatcggcttctctagtgacattatcaccgcctacgttaagacgatgtttcgtttc |
39511178 |
T |
|
| Q |
122 |
caacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatga |
221 |
Q |
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| T |
39511179 |
caaagctcgttgtgagtttaaaccgccactataattagataagcctggagaactagattctttgtaagtaaaacgcaacactgaatcagggattaaatga |
39511278 |
T |
|
| Q |
222 |
agagggagcataaagagttcaattgcattaacaaacgcaaatgatgat |
269 |
Q |
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| T |
39511279 |
acggggagcacaaagagttctattgcgttaacaaatgcgagtgatgat |
39511326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 39524829 - 39525067
Alignment:
| Q |
26 |
agttacataactgtcatctggtaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttccaac |
125 |
Q |
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| T |
39524829 |
agttatatatctgtcatctggtaaccattctcttgatagtgtatcagtttctctattaacaattccgccaccaacattaagacggaggttggtttccaac |
39524928 |
T |
|
| Q |
126 |
gatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagag |
225 |
Q |
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| T |
39524929 |
gatc---gagagaggaaatcattactataagtagataagtttctgccagtagactctttgtaatggaaaagcgcgattgagtcggggattaaatgaacag |
39525025 |
T |
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| Q |
226 |
ggagcataaagagttcaattgcattaacaaacgcaaatgatg |
267 |
Q |
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| T |
39525026 |
ggagcataaagagttctattgcattagcaaaggcaaatgatg |
39525067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 268
Target Start/End: Original strand, 39580628 - 39580756
Alignment:
| Q |
140 |
taaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagt |
239 |
Q |
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| T |
39580628 |
taaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgagtggggagtataaagagt |
39580727 |
T |
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| Q |
240 |
tcaattgcattaacaaacgcaaatgatga |
268 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
39580728 |
tccattgcattaacaaacgcaaatgatga |
39580756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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