View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_13 (Length: 270)
Name: NF7236_low_13
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 41484141 - 41483904
Alignment:
| Q |
17 |
taaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagaggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484141 |
taaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagaggg |
41484042 |
T |
|
| Q |
117 |
ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484041 |
ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt |
41483942 |
T |
|
| Q |
217 |
gtgattatctacttcacgcttctgcagatccttctcac |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41483941 |
gtgattatctacttcacgcttctgcagatccttctcac |
41483904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 41477100 - 41476861
Alignment:
| Q |
17 |
taaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatcacaaaa-gtgtgttcatgagag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| ||||||||| |||| ||||||||| ||||| |
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| T |
41477100 |
taaagaagcaaatttagttctcctgtaaattgatcactttcaaagtaatgtgttatatttttaagaaatagacctatcagaaaaagtgtgttcaagagag |
41477001 |
T |
|
| Q |
115 |
ggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctca |
214 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || |||||||| |||||||||| | ||||| |
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| T |
41477000 |
ggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctca |
41476901 |
T |
|
| Q |
215 |
ttgtgattatctacttcacgcttctgcagatccttctcac |
254 |
Q |
| |
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||| |||||||| ||| |||||||||||||||||| |||| |
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| T |
41476900 |
ttgagattatctgcttgacgcttctgcagatccttttcac |
41476861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 40751355 - 40751110
Alignment:
| Q |
17 |
taaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcac--aaaagtgtgttcatgagag |
114 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | ||||| |
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| T |
40751355 |
taaagaagccaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaacagac-tatcaggaaaaagtgtgtttaagagag |
40751257 |
T |
|
| Q |
115 |
ggttaaaa-------ggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggc |
207 |
Q |
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|||||||| ||||||||| |||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
40751256 |
ggttaaaacttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgtttcttctcaaaatatagcttggt |
40751157 |
T |
|
| Q |
208 |
tttctcattgtgattatctacttcacgcttctgcagatccttctcac |
254 |
Q |
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| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
40751156 |
tctctcattgtgattatctgcttgacgcttctgtagatccttctcac |
40751110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 41470065 - 41469945
Alignment:
| Q |
39 |
ctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatcacaaaa-gtgtgttcatgagagggttaaaaggagagaataattc |
136 |
Q |
| |
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||||||| |||| ||||||||| ||||||||| |||||| ||| | ||||||||| |||| ||||||||| ||||| |||||| |||| ||| | || |
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| T |
41470065 |
ctgtaaaatgatgactttcaaa-aaatgtgttgggattttaagaagtagacctatcagaaaaagtgtgttcaagagagcattaaaaagagataattactc |
41469967 |
T |
|
| Q |
137 |
atttagcattgctatcataaat |
158 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
41469966 |
atttagcattgctaccataaat |
41469945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 16408850 - 16408928
Alignment:
| Q |
176 |
attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcac |
254 |
Q |
| |
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|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||| |
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| T |
16408850 |
attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcac |
16408928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 16413236 - 16413347
Alignment:
| Q |
138 |
tttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgctt |
237 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| |||||||||| | | |||||||||||| | || || ||||||||||| ||| ||||| |
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| T |
16413236 |
tttagcattgctaccataaattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgctt |
16413335 |
T |
|
| Q |
238 |
ctgcagatcctt |
249 |
Q |
| |
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|||||||||||| |
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| T |
16413336 |
ctgcagatcctt |
16413347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 52472101 - 52471998
Alignment:
| Q |
144 |
attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag |
243 |
Q |
| |
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||||||| |||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
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| Q |
244 |
atcc |
247 |
Q |
| |
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|||| |
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| T |
52472001 |
atcc |
52471998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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