View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7236_low_15 (Length: 254)

Name: NF7236_low_15
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7236_low_15
NF7236_low_15
[»] chr3 (8 HSPs)
chr3 (9-237)||(23148530-23148758)
chr3 (9-237)||(23145692-23145920)
chr3 (9-214)||(23038836-23039041)
chr3 (8-230)||(23139825-23140047)
chr3 (9-217)||(23035962-23036170)
chr3 (9-233)||(23016838-23017062)
chr3 (8-200)||(23024081-23024273)
chr3 (9-172)||(23032551-23032714)
[»] scaffold0554 (1 HSPs)
scaffold0554 (9-199)||(6754-6944)
[»] chr6 (1 HSPs)
chr6 (9-198)||(21779624-21779813)
[»] scaffold0059 (1 HSPs)
scaffold0059 (10-142)||(62020-62152)
[»] chr1 (2 HSPs)
chr1 (9-142)||(12609772-12609905)
chr1 (9-141)||(12636869-12637001)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 23148758 - 23148530
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  23148758 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgttgttgtatcattttgactggaagcttcccagtggaataac 23148659  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23148658 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 23148559  T
Q  209 tgagcttcactagaagaaactgaaaactt 237  Q
    |||||||||||||||||||||||||||||    
T  23148558 tgagcttcactagaagaaactgaaaactt 23148530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 23145920 - 23145692
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||| ||| |||||| |  |||||||||||||||||||||||||||||||||||||    
T  23145920 gaagaatatgtccagggagcacatttggtttgacaaatattgagctggtccttgcaatgttattgtatcattttgactggaagcttcctagtggaataac 23145821  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  23145820 aggtgaagaaatggatatgactgaggaatttggactcacggtgagaagaaaagatgatcttttattgtgcccttttgtttataatcctttgcaaggtaca 23145721  T
Q  209 tgagcttcactagaagaaactgaaaactt 237  Q
    |||||||||| ||||||||||||||||||    
T  23145720 tgagcttcacgagaagaaactgaaaactt 23145692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 23039041 - 23038836
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||| |||||||| |     
T  23039041 gaagaatatgcccagggagcacatttggtttgagaagtattgagctggcccttgcaatgttgttgtatcattttgactggaagcttccaagtggaatcag 23038942  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 208  Q
    | |||||||  ||||||||||||| ||||| |||  |||  |||| ||||||||||||||||||||||   |||||||||||||||||||| |||| | |    
T  23038941 aagtgaagacttggatatgactgatgaattcggagccacaatgagaagaaaagatgatcttttattgttttcttttgtttatcatcctttgtaagtcata 23038842  T
Q  209 tgagct 214  Q
    ||||||    
T  23038841 tgagct 23038836  T

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Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 23140047 - 23139825
Alignment:
Q  8 cgaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataa 107  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| || |||| ||||   || ||| | ||||||| ||||||||||| |||||||| |    
T  23140047 cgaagaatatgcccaggaagcatatttggtttgagaaatgttgagttgacccttgcaacattgttgttttattttgattggaagcttccgagtggaatta 23139948  T
Q  108 caggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttac 207  Q
     | |||||||| |||||||||| |||||||||||| || | ||||| ||||||||||||||||||||||  |||||||||| |||||||||||  || |     
T  23139947 gaagtgaagaattggatatgaccgaggaatttggagtcgcagtgagaagaaaagatgatcttttattgttgccttttgtttgtcatcctttgcctgtcat 23139848  T
Q  208 atgagcttcactagaagaaactg 230  Q
     ||||||| ||||||||| ||||    
T  23139847 gtgagcttaactagaagatactg 23139825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 23036170 - 23035962
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| || ||| || ||||||||||||||||||||||||| |||||||| |     
T  23036170 gaagaatatgcccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttccaagtggaatcaa 23036071  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 208  Q
    | |||||||| |||| |||||||| |||||||||  |||  |||| ||||| ||||| ||||||||||   ||| ||||||||||||| |||| || | |    
T  23036070 aagtgaagaattggacatgactgacgaatttggagccacaatgagaagaaaggatgaacttttattgttttcttctgtttatcatcctctgcatgtcata 23035971  T
Q  209 tgagcttca 217  Q
    |||||||||    
T  23035970 tgagcttca 23035962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 23017062 - 23016838
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||| ||||| | ||| |||||||||||| ||||| ||||||| || ||| || |||||||||||||||||||||||||  ||||||| |     
T  23017062 gaagaatatgccctgggagtacattcggtttgagaaatgttgagttggcccttgcgatgttgttgtatcattttgactggaagcttcccggtggaatcaa 23016963  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagttaca 208  Q
    | |||| ||| |||| ||||||||| |||||||| ||||  |||||||||||||||| |||||| | |  ||||||||||||||||||||| | || | |    
T  23016962 atgtgacgaactggacatgactgagcaatttggagtcacaatgaggagaaaagatgaccttttactattgccttttgtttatcatcctttgaatgtcaga 23016863  T
Q  209 tgagcttcactagaagaaactgaaa 233  Q
    |||||||||  |||||||| |||||    
T  23016862 tgagcttcagaagaagaaaatgaaa 23016838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 23024273 - 23024081
Alignment:
Q  8 cgaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataa 107  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||| |||| | || |||| |||||||| ||||||||||||| |||||| |    
T  23024273 cgaagaatatgtccagggagcatatttggtttgcgaagtgttgagctagcccttgcaaagttgttgtaccattttgattggaagcttcctaatggaatca 23024174  T
Q  108 caggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgc 200  Q
     | |||||||| |||| ||||||||| |||||||  |||| ||| | |||||||||||||| |||||||  |||| ||||||||||| |||||    
T  23024173 aaagtgaagaattggacatgactgagaaatttggtatcacagtgtgtagaaaagatgatctattattgttaccttctgtttatcatcatttgc 23024081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 23032714 - 23032551
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||| || |||||||||||||||||| |||||||  |||||| |     
T  23032714 gaagaatatgcccagggagtacatttggtttgagaaatattgagctggccctcgcgatgttgttgtatcattttgactggacgcttcctgatggaatcag 23032615  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatctttta 172  Q
    | ||| |||| | || |||||||||||||||||| || |  |||| ||||||||||||||||||    
T  23032614 aagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 23032551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 6754 - 6944
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||| |||||||| || |||||||||||||||||| |||||||||| || || ||| || |||||||||||||||||||||||||  ||||||| |     
T  6754 gaagaatttgcccaggaagtatatttggtttgagaaatgttgagctggcgcttgcgatgttgttgtatcattttgactggaagcttccatgtggaatcaa 6853  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttg 199  Q
    | |||||||| |||| ||||| |||||||||||| | ||  |||| ||||| |||||||||| |||||  || | ||||||||||||||||    
T  6854 aagtgaagaattggacatgacagaggaatttggagttacaatgagaagaaaggatgatctttcattgtttccctctgtttatcatcctttg 6944  T

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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 21779813 - 21779624
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  | |||| || ||| || ||||||||||||||||||||||||| ||||| || |     
T  21779813 gaagaatatgcccagggagcacatttggtttgagaaatattgagacgacccttgcgatgttgttgtatcattttgactggaagcttccaagtgggatcaa 21779714  T
Q  109 aggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatccttt 198  Q
    | |||||||| |||| |||||||||||||| ||| ||||  |||  |||||| | ||||||||| |||  |||||   ||||||||||||    
T  21779713 aagtgaagaattggacatgactgaggaattcggagtcacaatgaaaagaaaaaacgatcttttagtgttacctttatcttatcatccttt 21779624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 62152 - 62020
Alignment:
Q  10 aagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataaca 109  Q
    ||||||||||||||| || | |||||||||||  | | |||||||||| || |||||| || ||||||| ||||| ||||||||||| | |||||| | |    
T  62152 aagaatatgcccaggcagtaaatttggtttgatgagtcttgagctggcacttgcaatgttgttgtatcactttgattggaagcttcccaatggaatgaaa 62053  T
Q  110 ggtgaagaaatggatatgactgaggaatttgga 142  Q
     |||||||  |||| ||||||||| ||||||||    
T  62052 tgtgaagacttggacatgactgagaaatttgga 62020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 12609905 - 12609772
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    |||||||||| ||||| |||| ||||||||||| |||| ||||| |||| || ||| || || ||||||| ||||| ||||||||||| | |||||| |     
T  12609905 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaatgaa 12609806  T
Q  109 aggtgaagaaatggatatgactgaggaatttgga 142  Q
    |||||| ||  | || ||||||||| ||||||||    
T  12609805 aggtgaggacttagacatgactgagcaatttgga 12609772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 12637001 - 12636869
Alignment:
Q  9 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgctgctgtatcattttgactggaagcttcctagtggaataac 108  Q
    |||||||||||||||| | || ||||||||||| |||| ||||| |||| || ||| || || | ||||| ||||| |||| |||||| | |||||| |     
T  12637001 gaagaatatgcccaggcatcacatttggtttgataaatgttgagttggcacttgcattgttgttatatcactttgattggaggcttcccaatggaatgaa 12636902  T
Q  109 aggtgaagaaatggatatgactgaggaatttgg 141  Q
    |||||| ||  |||| ||||||||| |||||||    
T  12636901 aggtgaggatttggacatgactgagcaatttgg 12636869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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