View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_16 (Length: 249)
Name: NF7236_low_16
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41483872 - 41483631
Alignment:
| Q |
1 |
ttccagcctggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41483872 |
ttccagcctggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaatgaaacaaaataaaacaga |
41483773 |
T |
|
| Q |
101 |
ctaagctaccatgaaatattaaaaaatcaaatcaactacaaatcattccaaaatgtaacagactgtaagctacaccaaaatgatatatatagtagtaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483772 |
ctaagctaccatgaaatattaaaaaatcaaatcaactacaaatcattccaaaatgtaacagactgtaagctacaccaaaatgatatatatagtagtaaaa |
41483673 |
T |
|
| Q |
201 |
accagaatgtttcacctctaaatcaaagaaacagaacaccaa |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483672 |
accagaatgtttcacctctaaatcaaagaaacagaacaccaa |
41483631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40751078 - 40750855
Alignment:
| Q |
1 |
ttccagcctggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacaga |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| |||||| || ||||||| |
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| T |
40751078 |
ttccagcctggatttttcatgatccttagatactttctcctgatactcgcattcaacctgccgcatcttgctgatttctaatgaaacaatatgaaacaga |
40750979 |
T |
|
| Q |
101 |
ctaagctaccatgaaatattaaaaaatcaaatcaactacaaatcattccaaaatgtaacagactgtaagctacaccaaaatgatatatatagtagtaaaa |
200 |
Q |
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|| ||||||||||||||||||| |||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||| | ||||||||||| |
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| T |
40750978 |
ctcagctaccatgaaatattaacaaatcatatcagttatatatcattccaaaatgcaatagaatgtaagctacaccaaaatgataggtgtagtagtaaaa |
40750879 |
T |
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| Q |
201 |
accagaatgtttcacctctaaatc |
224 |
Q |
| |
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|| | | ||||||||||||||||| |
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| T |
40750878 |
acgatagtgtttcacctctaaatc |
40750855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41476829 - 41476577
Alignment:
| Q |
1 |
ttccagcctggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacaga |
100 |
Q |
| |
|
|||| |||| ||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| | ||||||| |
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| T |
41476829 |
ttcctgcctagctatttcatgatccttcgatactttctcctgatactcacgttcaacctgccgcatcttgctgatttctaatggaacaatgtgaaacaga |
41476730 |
T |
|
| Q |
101 |
ctaagctacc-------atgaaatattaaaaaatcaaatcaact---acaaatcattccaaaatgtaacagactg-taagctacaccaaaatgatatata |
189 |
Q |
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|| ||||||| || ||| |||||||||||||||| ||| |||||||||||||||||| | |||| || ||||||| ||| | | || | ||| |
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| T |
41476729 |
ctcagctaccacaaaatatcaaaaattaaaaaatcaaatcgactacaacaaatcattccaaaatgcagcagaatgttaagctataccgagaagaaagata |
41476630 |
T |
|
| Q |
190 |
tagtagtaaaaaccagaatgtttcacctctaaatcaaagaaacagaacaccaa |
242 |
Q |
| |
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|| || ||||||||||||||||| ||||||||| | ||||||||| ||||| |
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| T |
41476629 |
tattaataaaaaccagaatgttttggctctaaatccatgaaacagaataccaa |
41476577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 41469655 - 41469553
Alignment:
| Q |
140 |
aaatcattccaaaatgtaacagactgtaagctacaccaaaatgatatatatagtagtaaaaaccagaatgtttcacctctaaatcaaagaaacagaacac |
239 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||| ||| |||||||||| || |||||||||||||||||| |||||||||||| ||||| ||| || |
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|
| T |
41469655 |
aaatcattaaaaaatgcaacagaatgtaagctacaccgaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacggaatac |
41469556 |
T |
|
| Q |
240 |
caa |
242 |
Q |
| |
|
||| |
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|
| T |
41469555 |
caa |
41469553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16408960 - 16409100
Alignment:
| Q |
1 |
ttccagcctggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| || ||||||| |
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| T |
16408960 |
ttccagcctggctttttcatgatccttggatattttctcctgatactcgcgttcaacctgccgcatcttgctgatttctaatggaacaatatgaaacaga |
16409059 |
T |
|
| Q |
101 |
ctaagctaccatgaaatattaaaaaatcaaatcaactacaa |
141 |
Q |
| |
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| || ||||||||||||||||| ||||| ||| ||||||| |
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| T |
16409060 |
cacagttaccatgaaatattaaacaatcacatcgactacaa |
16409100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 16413433 - 16413509
Alignment:
| Q |
50 |
cgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacagactaagctaccatgaaatattaaaaaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||||| |||||| |
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| T |
16413433 |
cgttcaacctgccgcatcttgctgatttctaacggaacaatgtgaaacagacttagctaccatgaaatataaaaaaa |
16413509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 16409134 - 16409174
Alignment:
| Q |
196 |
taaaaaccagaatgtttcacctctaaatcaaagaaacagaa |
236 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16409134 |
taaaaacaagaatgtttcacctctaaatcaaagaaacagaa |
16409174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 52471951 - 52471849
Alignment:
| Q |
9 |
tggctttttcatgatccttagatactttctcctggtactctcgttcaacctgccgcatcttgctgatctctaataaaacaaaataaaacagactaagcta |
108 |
Q |
| |
|
|||||||||||||||||||||| | || ||| | || | |||||||| ||||||||||||||||| |||||| ||||| | ||||| ||||||||| |
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| T |
52471951 |
tggctttttcatgatccttagacatattttccagatagttgcgttcaacttgccgcatcttgctgatttctaatggaacaatgtgaaacaaactaagcta |
52471852 |
T |
|
| Q |
109 |
cca |
111 |
Q |
| |
|
||| |
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|
| T |
52471851 |
cca |
52471849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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