View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_18 (Length: 238)
Name: NF7236_low_18
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28976754 - 28976532
Alignment:
| Q |
1 |
taaacaaacttcaaactttcatccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgtagaaaaaatcatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28976754 |
taaacaaacttcaaactttcatccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgtagaaaaaatcatattg |
28976655 |
T |
|
| Q |
101 |
tgatttgttcaatnnnnnnnnnnnnnngtataactcgttacaagaaacctcttcataaaattaaaattattatttccctaaaaaatgtgtctctgtccct |
200 |
Q |
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| T |
28976654 |
tgatttgttcaataaaaagaaaaaaaagtataactcgttacaagaaacctcttcataaaattaaaattattatttccctaaaaaatgtgtctctgtccct |
28976555 |
T |
|
| Q |
201 |
aagtatcactaaagtgattatag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28976554 |
aagtatcactaaagtgattatag |
28976532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 34859914 - 34860092
Alignment:
| Q |
1 |
taaacaaacttcaaactttcatccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgtagaaaaaatcatattg |
100 |
Q |
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||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
34859914 |
taaacaaacttcaaaattccatccatattttacatcctttgaatgtaatggaatcaaaaagcttgtttaagatatttataaggtagaaaaaatcatattg |
34860013 |
T |
|
| Q |
101 |
tgatttgttcaatnnnnnnnnnnnnnngtataactcgttacaagaaacctcttcataaaattaaaattattatttccctaaaaaa |
185 |
Q |
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| T |
34860014 |
tgatttgttcaat-----agaaaaaaagtataacttgttacaagaaacc-cttcataaaattaaaattattatttccctaaaaaa |
34860092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34849709 - 34849932
Alignment:
| Q |
1 |
taaacaaacttcaaactttcatccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgtagaaaaaatcatattg |
100 |
Q |
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|
||||||||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34849709 |
taaacaaactttaaaataacatccatattttgcctcatttgaatgtaatggaatgaaaaagcttgcttgagatatttata--gtagaaaaaatcatattg |
34849806 |
T |
|
| Q |
101 |
tgatttgttcaatnnnnnnnnnnnnnngtataactcgttacaagaaacctcttcataaaattaaaattattatttccctaaa------------aaatgt |
188 |
Q |
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||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |
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| T |
34849807 |
tgatttgttcaat-----tgaaaaaaagtataacttgttacaagaaacc-cttcataaaattaaaattattatttccttaaaaaagttattattaaatgt |
34849900 |
T |
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| Q |
189 |
gtctctgtccctaagtatcactaaagtgatta |
220 |
Q |
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| |||||||||||||||||||||||||||||| |
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| T |
34849901 |
gcctctgtccctaagtatcactaaagtgatta |
34849932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 34863059 - 34862992
Alignment:
| Q |
23 |
ccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgtagaaaa |
90 |
Q |
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||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
34863059 |
ccatattttgcctcccttgaatgtaataaaatcaaaaagtttgattgagatatttataatgtagaaaa |
34862992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 34843448 - 34843364
Alignment:
| Q |
1 |
taaacaaacttcaaactttcatccatattttgcctcctttgaatgtaatggaatcaaaaagcttgcttgagatatttataatgta |
85 |
Q |
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||||||||||||||| ||||| ||||||||| |||||||||||| |||| |||||||| || ||| |||| ||||||||||||| |
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| T |
34843448 |
taaacaaacttcaaagtttcacccatatttttcctcctttgaatataatagaatcaaatagtttgtttgacgtatttataatgta |
34843364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 34860102 - 34860139
Alignment:
| Q |
183 |
aaatgtgtctctgtccctaagtatcactaaagtgatta |
220 |
Q |
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||||||| || ||||||||||||||||||||||||||| |
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| T |
34860102 |
aaatgtgcctgtgtccctaagtatcactaaagtgatta |
34860139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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