View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_19 (Length: 223)
Name: NF7236_low_19
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 59409 - 59187
Alignment:
| Q |
1 |
tgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcactattggcgctgagcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59409 |
tgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcactattggcgctgagcgt |
59310 |
T |
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| Q |
101 |
tttaggtgtccagaggtcttataccaaccatccatggtgggaatggaagctgcaggaattcatgagaccacttacaactccataatgaaatgtgatgttg |
200 |
Q |
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| T |
59309 |
tttaggtgtccagaggtcttataccaaccatccatggtgggaatggaagctgcaggaattcatgagaccacttacaactccataatgaaatgtgatgttg |
59210 |
T |
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| Q |
201 |
acatcaggaaagacctgtatggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
59209 |
acatcaggaaagacctgtatggt |
59187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8689784 - 8690002
Alignment:
| Q |
1 |
tgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcactattggcgctgagcgt |
100 |
Q |
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|||||||||||||||||| |||||| ||| ||||||||| | || ||||||||||| || ||||||||||| || || ||||| || || | |||||| |
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| T |
8689784 |
tgactatgagcaagagctggagacagccaggaccagctcatccgtcgagaagagctacgaattgcctgatggacaggtgatcaccatcggagacgagcgt |
8689883 |
T |
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| Q |
101 |
tttaggtgtccagaggtcttataccaaccatccatggtgggaatggaagctgcaggaattcatgagaccacttacaactccataatgaaatgtgatgttg |
200 |
Q |
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| T |
8689884 |
ttcagatgtccagaggtcctgttccaaccatctatgataggaatggaagcagcaggcattcacgagaccacatacaactccatcatgaagtgcgatgttg |
8689983 |
T |
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| Q |
201 |
acatcaggaaagacctgta |
219 |
Q |
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| T |
8689984 |
atatcaggaaagacttgta |
8690002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 41388369 - 41388584
Alignment:
| Q |
7 |
tgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcactattggcgctgagcgttttagg |
106 |
Q |
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| T |
41388369 |
tgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatggacagataatcactattggtgctgagcgtttccgt |
41388468 |
T |
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| Q |
107 |
tgtccagaggtcttataccaaccatccatggtgggaatggaagctgcaggaattcatgagaccacttacaactccataatgaaatgtgatgttgacatca |
206 |
Q |
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| T |
41388469 |
tgtcctgaggttcttttccagccttccatggttggaatggaagctgttggaattcacgagacgacatacaactcaatcatgaagtgtgatgttgatatca |
41388568 |
T |
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| Q |
207 |
ggaaagacctgtatgg |
222 |
Q |
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| T |
41388569 |
gaaaggacctgtatgg |
41388584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 43647212 - 43647070
Alignment:
| Q |
65 |
cctgatgggcaagtcatcactattggcgctgagcgttttaggtgtccagaggtcttataccaaccatccatggtgggaatggaagctgcaggaattcatg |
164 |
Q |
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|||||||| ||||| ||||| ||||| |||||| | || | || ||||| ||| | | ||||||||| ||| | |||||||||||||| |||||||| | |
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| T |
43647212 |
cctgatggacaagttatcacaattggagctgagaggttccgttgcccagaagtccttttccaaccatcaatgatcggaatggaagctgctggaattcacg |
43647113 |
T |
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| Q |
165 |
agaccacttacaactccataatgaaatgtgatgttgacatcag |
207 |
Q |
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| T |
43647112 |
agaccacctacaactctatcatgaagtgtgatgtggatatcag |
43647070 |
T |
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