View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_2 (Length: 593)
Name: NF7236_low_2
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_2 |
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| [»] scaffold0721 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 20 - 585
Target Start/End: Complemental strand, 31437396 - 31436833
Alignment:
| Q |
20 |
cgagattggtacctccaaggtcaagtgagactaggctggaagactcagccaagtctgttggaaacgtccatggagcaaggtcattgttgaaactcatgga |
119 |
Q |
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| T |
31437396 |
cgagattggtacctccaaggtcaagtgagactaggctggaagactcagccaagtctgttggaaacgtccatggagcaaggtcattgttgaaactcatgga |
31437297 |
T |
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| Q |
120 |
gagtgtttggaggtcagtgagtcctttgaagcagccaacaggaactgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcg |
219 |
Q |
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| T |
31437296 |
gagtgtttggaggtcagtgagtcctttgaagcagccaacaggaactgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcg |
31437197 |
T |
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| Q |
220 |
agtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgact |
319 |
Q |
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| T |
31437196 |
agtgatggtaatgcgccagaaagagagttggactgaagaaagagggaggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgact |
31437097 |
T |
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| Q |
320 |
tggaagaaaggtcgatagatgttactcgatgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctgacggagtagg |
419 |
Q |
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| T |
31437096 |
tggaagaaaggtcgatagatgttactcggtgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctaattgaccaacctgacggagtagg |
31436997 |
T |
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| Q |
420 |
actcaaagattttgctagctttgacatgaaagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcactttt |
519 |
Q |
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| T |
31436996 |
actcaaagattttgctagctttgacatgaaagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcactttt |
31436897 |
T |
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| Q |
520 |
gattttgagggagccatttagatttctttcggaaattgaggaatactagagcagaaagagtattat |
585 |
Q |
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| T |
31436896 |
gattttgagggagccatttagatttctttcggaaattgagg--taatagagcagaaagagtattat |
31436833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 468
Target Start/End: Complemental strand, 15061542 - 15061284
Alignment:
| Q |
210 |
gaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcgagttgagatcggaaggaagtgttcca |
309 |
Q |
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| T |
15061542 |
gaggttagcaagtgagggtaatgcaccggaaagagagttggaaaatagaactagggacgtgagtgatgaaagtgagttgagatcagaaggaattgttcca |
15061443 |
T |
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| Q |
310 |
ttgagtgacttggaagaaaggtcgatagatgttactcgatgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctg |
409 |
Q |
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| T |
15061442 |
ataagtgacatggaagcaagcttgatagatgttacgctgttaaattcgtcgcatcttacgcctgtccagaggcagaaggatgtgttcgatgaccaacctg |
15061343 |
T |
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| Q |
410 |
acggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
468 |
Q |
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| T |
15061342 |
atggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
15061284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0721 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0721
Description:
Target: scaffold0721; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 399 - 468
Target Start/End: Original strand, 6187 - 6256
Alignment:
| Q |
399 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
468 |
Q |
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| T |
6187 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
6256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 399 - 468
Target Start/End: Original strand, 2706 - 2775
Alignment:
| Q |
399 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
468 |
Q |
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| T |
2706 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
2775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 38161951 - 38162084
Alignment:
| Q |
184 |
ccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcg |
283 |
Q |
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|||||| ||||||||||||||| || |||||| ||||| || || || ||||| | || |||||||| |||||| | || | ||||| || ||||| | |
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| T |
38161951 |
ccaaggaaaaccgtttgaagcatggtgaggttcgcgagagaaggcaacgcgccggtgagtgagttggattgaagagaaagtgtagtgagctgagagagtg |
38162050 |
T |
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| Q |
284 |
agttgagatcggaaggaagtgttccattgagtga |
317 |
Q |
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| T |
38162051 |
agttcagatcggaaggtaatgttccggtgagtga |
38162084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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