View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_4 (Length: 458)
Name: NF7236_low_4
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_4 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 33950634 - 33951043
Alignment:
| Q |
16 |
atatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950634 |
atatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagc |
33950733 |
T |
|
| Q |
116 |
aatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
33950734 |
aatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatga |
33950833 |
T |
|
| Q |
216 |
ttcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccat |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
33950834 |
ttcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccat |
33950933 |
T |
|
| Q |
316 |
gaaaattttgtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcat |
415 |
Q |
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| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
33950934 |
g---------------aattcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccat |
33951018 |
T |
|
| Q |
416 |
ttagcaagttgaaaatggagcttct |
440 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
33951019 |
ttagcaagttgaaaatggagcttct |
33951043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 33990110 - 33990526
Alignment:
| Q |
16 |
atatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagc |
115 |
Q |
| |
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||||||||||| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| ||||||| |
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| T |
33990110 |
atatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
33990209 |
T |
|
| Q |
116 |
aatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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|||||||||| ||||||||||| |||||||||||||| || | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33990210 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
33990309 |
T |
|
| Q |
216 |
ttcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccat |
315 |
Q |
| |
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||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |
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| T |
33990310 |
ttcctat------gttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactat |
33990403 |
T |
|
| Q |
316 |
gaaaattttgtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcat |
415 |
Q |
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|||| ||||| ||||||||||||||||| | || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33990404 |
gaaacttttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccat |
33990503 |
T |
|
| Q |
416 |
ttagcaagttgaaaatggagctt |
438 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33990504 |
ttagcaagttgaaaatggagctt |
33990526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 81 - 321
Target Start/End: Original strand, 33959346 - 33959580
Alignment:
| Q |
81 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgca |
180 |
Q |
| |
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||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
181 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgcttt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| || |||| |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacacttt |
33959539 |
T |
|
| Q |
281 |
ataaggccagagaaattcttgagcttctcatccatgaaaat |
321 |
Q |
| |
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||||| | |||||||||||||||||||||| ||| |||||| |
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| T |
33959540 |
ataagccaagagaaattcttgagcttctcaaccacgaaaat |
33959580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 36 - 321
Target Start/End: Original strand, 33973318 - 33973582
Alignment:
| Q |
36 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
135 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| |
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| T |
33973318 |
agcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggat |
33973417 |
T |
|
| Q |
136 |
caccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttg |
235 |
Q |
| |
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|| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||| ||||||| |
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| T |
33973418 |
caacccagagaagaaataaatagtttgataga---------------agaaagtgcatgcaaatcttcttttgagaatgattc------ctacgttgttg |
33973496 |
T |
|
| Q |
236 |
aggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaat |
321 |
Q |
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| |||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| |
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| T |
33973497 |
atgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccacgaaaat |
33973582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 33973577 - 33973638
Alignment:
| Q |
379 |
gaaaatccaaaattcactgttgggttggatatagcatttagcaagttgaaaatggagcttct |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttct |
33973638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 225 - 437
Target Start/End: Original strand, 10341 - 10556
Alignment:
| Q |
225 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
324 |
Q |
| |
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|||||| ||||| || |||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| | | | ||||||||| |
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| T |
10341 |
ctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaaaatttt |
10440 |
T |
|
| Q |
325 |
gtacacaaattcaatgaagatggacaac---tttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcatttagca |
421 |
Q |
| |
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| ||| ||||| |||||| |||||| || | || ||| ||||||| | |||||| ||||||||| |||||| ||||||| | |||||| ||||||||| |
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| T |
10441 |
gaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccatttagca |
10540 |
T |
|
| Q |
422 |
agttgaaaatggagct |
437 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
10541 |
agttgaaaatggagct |
10556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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