View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_5 (Length: 447)
Name: NF7236_low_5
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 53 - 447
Target Start/End: Original strand, 3687129 - 3687522
Alignment:
| Q |
53 |
cgagtgcaactaaatatatttgaaagttttgttttgaatatgttaacttcctattagcaaatatgataattgattagaaaatttgatggaactttaaaat |
152 |
Q |
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| T |
3687129 |
cgagtgcaactaaatatatttgaaagttttgttt-gaatatgttaacttcctattagcaaatatgataattgattagaaaatttgatggaactttaaaat |
3687227 |
T |
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| Q |
153 |
tgaaacctttgaaatattttggcaataatttnnnnnnnnnnnnngtgaatgcatgtaaattctattttattttaaattgacttgttgataattaatcata |
252 |
Q |
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| T |
3687228 |
tgaaacctttgaaatattttggcaataatttaaaaaaggaaaaagtgaatgcatataaattctattttattttgaatcgacttgttgataattaatcata |
3687327 |
T |
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| Q |
253 |
cgcataacttttatagatcaacacaaaattattacaaattgtaagctccaaaggtaagttcaattgtatattttatttattttgattgtaatgatacaat |
352 |
Q |
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| T |
3687328 |
cgcataacttttatagatcaacacaaaattattacaaattgtaagctccaaatgtaagttcaattgtatattttatttattttgattgtaatgatacaat |
3687427 |
T |
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| Q |
353 |
agaactcattaagataaacaacaacaagccgttagtgtgattttgcctgtacattgtccacctttctgaaatcccttggcacgacaatcttgatc |
447 |
Q |
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| T |
3687428 |
ggaactcattaagataaacaacaacaagccgttattgtgattttgcctgtacattgtccacctttttgaaatcccttggcacgacaatcttgatc |
3687522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 199 - 443
Target Start/End: Original strand, 2537888 - 2538133
Alignment:
| Q |
199 |
gaatgcatgtaaattctattttattttaaattg-acttgttgataattaatcatacgcataacttttatagatcaacacaaaattattacaaattgtaag |
297 |
Q |
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| T |
2537888 |
gaatccatataaattttattttattttgaatagtactttttgataattaatcatgtgcatagcttttatggatcagcacaaaattattacaaattgtaag |
2537987 |
T |
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| Q |
298 |
ctccaaaggtaagttcaattgtatattttatttattttgattgtaatgatacaatagaactcattaagataaacaacaacaagccgttagtgtgattttg |
397 |
Q |
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| T |
2537988 |
ctccaaaggtaagttcaagtgcatgttttatctattttgattgcaatgatacagtagaactcattaggataaacaacaacaaccgtttaacaagatattt |
2538087 |
T |
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| Q |
398 |
cctgtacattgtccacctttctgaaatcccttggcacgacaatctt |
443 |
Q |
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| T |
2538088 |
cctatacattgtccgcttttctgaaatcctttgtcatgacaatctt |
2538133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 2537739 - 2537857
Alignment:
| Q |
59 |
caactaaatatatttgaaagttttgttttgaatatgttaacttcctattagcaaatatgata--attgattagaaaatttgatggaactttaaaattgaa |
156 |
Q |
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| T |
2537739 |
caactaaatatatttgaaagttttg-tttgaatgtgttaacttgctattagtaaaaacaataatattgagtaggggttttgattgaagtttaaaattgat |
2537837 |
T |
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| Q |
157 |
acctttgaaatattttggca |
176 |
Q |
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||| |||||||| ||||||| |
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| T |
2537838 |
accattgaaatactttggca |
2537857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 3609548 - 3609496
Alignment:
| Q |
328 |
tttattttgattgtaatgatacaatagaactcattaagataaacaacaacaag |
380 |
Q |
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| T |
3609548 |
tttattttgattgcaatgatacaatagaactcattagtgaaaacaacaacaag |
3609496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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