View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_6 (Length: 413)
Name: NF7236_low_6
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 38736553 - 38736168
Alignment:
| Q |
19 |
gtaagtataaaccatttgaggtaaacccagaaatcattgcattccaagaaacatcgtttacatctgtcatgttgttaaacacgttaacagaacactcaca |
118 |
Q |
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| T |
38736553 |
gtaagtataaaccatttgaggtaaacccagaaatcattgcattccaagaaacatcgtttacatctgtcatgttgttaaacacgttaacagaacactcaca |
38736454 |
T |
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| Q |
119 |
cattcctaacttcgcatacaagttaagaagagatgtcccaacaacagcatgcataagaaaacccctaacaacaacttgggcatgaaccatctcaccaaac |
218 |
Q |
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| T |
38736453 |
cattcctaacttcgcatacaagttaagaagagatgtcccaacaacagcatgcataagaaaacccctaacaacaacttgggcatgaaccatctcaccaaac |
38736354 |
T |
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| Q |
219 |
acaacagaatctaacccaacacaagactgcaaaacagcagagaaagcaaacccatcaagcaacaaaccctgctccaacatcatacaaaaaagctccaacg |
318 |
Q |
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| T |
38736353 |
acaacagaatctaacccaacacaagactgcaaaacagcagagaaagcaaacccatcaagcaacaaaccctgttccaacatcatacaaaaaagctccaacg |
38736254 |
T |
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| Q |
319 |
cgtaacgatagtaaccatgttcgtttgaagcaacaatcatgacagtccaagaaaacacatttctttcagacataccatcaaacacc |
404 |
Q |
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| T |
38736253 |
cgtaacgatagtaaccatgttcgtttgaagcaacaatcatgacagtccaagaaaacacatttctttcagacataccatcaaacacc |
38736168 |
T |
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