View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7236_low_9 (Length: 376)
Name: NF7236_low_9
Description: NF7236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7236_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 41896907 - 41897111
Alignment:
| Q |
17 |
aattgtagcctgaatttctagtgtcactgcttggccagaaaatgcaaatgagatttgaccaagtgcactgaagactctaaacaataaatcagttttgctg |
116 |
Q |
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| T |
41896907 |
aattgtagcctgaatttctagtgtcactgcttggccagaaaatgcaaatgagatttgaccaagtgcactgaagactctaaacaataaatcagttttgctg |
41897006 |
T |
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| Q |
117 |
atttgcttgtatgcatagttaacattgtcaatccgacctctagataagcatgccacccatgctatagttgaatagctgcagtcaaaatcacactaaatag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41897007 |
atttgcttgtatgcatagttaacattgtcaatccgacctctagataagcatgccacccatgctatagttgaatagctgcagtcaaaatcacactatatag |
41897106 |
T |
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| Q |
217 |
taagg |
221 |
Q |
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||||| |
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| T |
41897107 |
taagg |
41897111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 41891335 - 41891517
Alignment:
| Q |
21 |
gtagcctgaatttctagtgtcactgcttggccagaaaatgcaaatgagatttgaccaagtgcactgaagactctaaacaataaatcagttttgctgattt |
120 |
Q |
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| T |
41891335 |
gtagcttgaatttcaagggtcactgcatggccagcaaatgcaaatgatatttgaccaagtgcattgaagactctgaacaataaatcagttttgctgattg |
41891434 |
T |
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| Q |
121 |
gcttgtatgcatagttaacattgtcaatccgacctctagataagcatgccacccatgctatagttgaatagctgcagtcaaaa |
203 |
Q |
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| T |
41891435 |
gtttgtatgcatagctaacattgtcaatccggcctctaggtaagcaagccacccatgctatagttgaataactgcactcaaaa |
41891517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 41897135 - 41897245
Alignment:
| Q |
253 |
tttagaagtgataatcacttattttaatttgttttatggtatgaaattaatccaaatactttatggaaaagaataaatgttggatcaacaagtaccttaa |
352 |
Q |
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| T |
41897135 |
tttagaagtgataatcacttattttaatttgttttatggtatgaaattaatccaaatactttatggaaaagaataaatgttggatcaacaagtaccttaa |
41897234 |
T |
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| Q |
353 |
tgacatcacag |
363 |
Q |
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| T |
41897235 |
tgacatcacag |
41897245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 332 - 363
Target Start/End: Original strand, 41893292 - 41893323
Alignment:
| Q |
332 |
ttggatcaacaagtaccttaatgacatcacag |
363 |
Q |
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| T |
41893292 |
ttggatcaacaagtaccttaatgacatcacag |
41893323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 22550603 - 22550426
Alignment:
| Q |
17 |
aattgtagcctgaatttctagtgtcactgcttggccagaaaatgcaaatgagatttgaccaagtgcactgaagactctaaacaataaatcagttttgctg |
116 |
Q |
| |
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|||||| || |||||||| |||| ||||| ||||||| |||||||||||| ||||||||||||||| |||||| || || | ||| ||| || |||| |
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| T |
22550603 |
aattgttgcttgaatttcaagtgctactgcatggccagcaaatgcaaatgaaatttgaccaagtgcattgaagattcggaatattaagtcacttgtgctt |
22550504 |
T |
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| Q |
117 |
atttgcttgtatgcatagttaacattgtcaatccgacctctagataagcatgccacccatgctatagttgaatagctg |
194 |
Q |
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|| ||||||| |||| | ||||| |||| || |||| | | |||||| || ||||| |||||||||||||||||| |
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| T |
22550503 |
gttcctttgtatgaatagctcacattctcaaccctacctttggctaagcaagctacccaggctatagttgaatagctg |
22550426 |
T |
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