View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7237_low_1 (Length: 552)
Name: NF7237_low_1
Description: NF7237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7237_low_1 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 17006552 - 17006016
Alignment:
| Q |
1 |
ctcttcaatgttcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgtta |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17006552 |
ctcttcaacattcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaaaattgtta |
17006453 |
T |
|
| Q |
101 |
aaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaag |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006452 |
aaaattccctcttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaag |
17006353 |
T |
|
| Q |
201 |
gtctctacgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgcatcgggtca |
300 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17006352 |
gtctcttcgagcatcaacatggtctttattctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtca |
17006253 |
T |
|
| Q |
301 |
agattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgc |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17006252 |
agattatgacgcaaaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttctagattggagggtcatcttttgtagattgcctcttgc |
17006153 |
T |
|
| Q |
401 |
ctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatg |
500 |
Q |
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| T |
17006152 |
ctgtcc--tttttttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatg |
17006055 |
T |
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| Q |
501 |
acctttatgttttcaacctgttcaagaacttgatgtcca |
539 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
17006054 |
acctttatgttttcaacctgttgaagaacttgatgtcca |
17006016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 2545 - 3050
Alignment:
| Q |
1 |
ctcttcaatgttcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgtta |
100 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2545 |
ctcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgtta |
2644 |
T |
|
| Q |
101 |
aaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2645 |
aaaaatccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaag |
2744 |
T |
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| Q |
201 |
gtctctacgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgcatcgggtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2745 |
gtctctacgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtca |
2844 |
T |
|
| Q |
301 |
agattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845 |
agattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgc |
2944 |
T |
|
| Q |
401 |
ctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatg |
500 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945 |
ctgtcc--tttttttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatg |
3042 |
T |
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| Q |
501 |
acctttat |
508 |
Q |
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|||||||| |
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| T |
3043 |
acctttat |
3050 |
T |
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Back To:
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