View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7237_low_2 (Length: 510)

Name: NF7237_low_2
Description: NF7237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7237_low_2
NF7237_low_2
[»] chr6 (7 HSPs)
chr6 (300-502)||(30521206-30521407)
chr6 (177-300)||(30521049-30521172)
chr6 (17-143)||(30520888-30521015)
chr6 (336-408)||(10791687-10791759)
chr6 (336-408)||(10795925-10795997)
chr6 (338-409)||(8875691-8875762)
chr6 (379-435)||(11333273-11333329)
[»] chr1 (19 HSPs)
chr1 (336-494)||(33988070-33988227)
chr1 (336-435)||(14654348-14654447)
chr1 (336-435)||(14664139-14664238)
chr1 (336-435)||(14669717-14669816)
chr1 (336-435)||(14683750-14683849)
chr1 (336-435)||(14706088-14706187)
chr1 (336-435)||(14708578-14708677)
chr1 (336-410)||(14652525-14652599)
chr1 (336-410)||(14662316-14662390)
chr1 (336-410)||(14674481-14674555)
chr1 (336-410)||(14676632-14676706)
chr1 (336-410)||(14679859-14679933)
chr1 (338-435)||(14681601-14681698)
chr1 (336-408)||(28366234-28366306)
chr1 (336-408)||(38175565-38175637)
chr1 (336-435)||(14716291-14716390)
chr1 (336-410)||(14667144-14667218)
chr1 (339-435)||(11872489-11872585)
chr1 (342-409)||(37422175-37422242)
[»] chr8 (13 HSPs)
chr8 (336-494)||(40054312-40054469)
chr8 (336-409)||(41841186-41841259)
chr8 (336-409)||(44878983-44879056)
chr8 (336-409)||(44880865-44880938)
chr8 (338-409)||(37679757-37679828)
chr8 (331-409)||(37682052-37682130)
chr8 (336-410)||(10944432-10944506)
chr8 (353-407)||(44582870-44582924)
chr8 (336-409)||(42220880-42220952)
chr8 (336-435)||(42555091-42555190)
chr8 (367-409)||(42092051-42092093)
chr8 (336-379)||(42872514-42872557)
chr8 (451-493)||(37682171-37682213)
[»] chr5 (6 HSPs)
chr5 (332-408)||(7524964-7525040)
chr5 (336-435)||(3643640-3643739)
chr5 (336-409)||(1716486-1716559)
chr5 (340-409)||(4103249-4103318)
chr5 (369-409)||(5350672-5350712)
chr5 (362-407)||(19261152-19261197)
[»] chr4 (11 HSPs)
chr4 (336-497)||(3461089-3461249)
chr4 (336-480)||(11652356-11652499)
chr4 (337-410)||(26984700-26984773)
chr4 (337-410)||(26998773-26998846)
chr4 (336-409)||(49106563-49106636)
chr4 (336-408)||(49108668-49108740)
chr4 (336-408)||(50077234-50077306)
chr4 (364-409)||(21503706-21503751)
chr4 (337-410)||(48205832-48205905)
chr4 (338-410)||(41013579-41013651)
chr4 (343-413)||(26982549-26982616)
[»] chr2 (22 HSPs)
chr2 (336-435)||(2841025-2841124)
chr2 (336-410)||(32918080-32918154)
chr2 (336-409)||(43850049-43850122)
chr2 (338-410)||(30733990-30734062)
chr2 (336-435)||(30732008-30732107)
chr2 (336-409)||(9032053-9032126)
chr2 (336-403)||(9008021-9008088)
chr2 (336-403)||(9026786-9026853)
chr2 (336-403)||(8973312-8973379)
chr2 (336-403)||(8979322-8979389)
chr2 (336-403)||(9023447-9023514)
chr2 (338-493)||(19232351-19232504)
chr2 (336-409)||(9020847-9020920)
chr2 (343-413)||(10763908-10763978)
chr2 (336-403)||(8984693-8984760)
chr2 (338-403)||(8988457-8988522)
chr2 (343-398)||(9030405-9030460)
chr2 (338-405)||(6471747-6471813)
chr2 (336-403)||(8992148-8992215)
chr2 (336-403)||(9016493-9016563)
chr2 (445-494)||(9026895-9026944)
chr2 (340-409)||(35701893-35701962)
[»] scaffold0549 (1 HSPs)
scaffold0549 (445-494)||(5504-5553)
[»] chr7 (2 HSPs)
chr7 (336-409)||(27134511-27134584)
chr7 (456-497)||(8128610-8128653)
[»] chr3 (1 HSPs)
chr3 (338-384)||(15758562-15758608)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 300 - 502
Target Start/End: Original strand, 30521206 - 30521407
Alignment:
Q  300 gtctgatataaatgcagcattgagcagctaaacaagtcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatc 399  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30521206 gtctgatataaatgcagcattgagcagctaaacaaatcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatc 30521305  T
Q  400 tgatatgtggatcatcgcctcacacgatattcaatttannnnnnngagggggagagtccactacaatagcttgctattgggtctctcaagtgtcgtctct 499  Q
    ||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  30521306 tgatatgtggaccatcgcctcacacgatattcaattta-ttttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtcttt 30521404  T
Q  500 gct 502  Q
    |||    
T  30521405 gct 30521407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 30521049 - 30521172
Alignment:
Q  177 atatataagctccaaatgacgacaaaagcgtaaattcctcacatcaacatgttaggaatgaatagctgaattttgaatttgaacagacagtgttaaaagc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30521049 atatataagctccaaatgacgacaaaagcgtaaattcctcacatcaacatgttaggaatgaatagctgaattttgaatttgaacagacagtgttaaaagc 30521148  T
Q  277 tgctgcatagaagtcccacattgg 300  Q
    ||||||||||||||||||||||||    
T  30521149 tgctgcatagaagtcccacattgg 30521172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 30520888 - 30521015
Alignment:
Q  17 acactttatagcaaggaatttaccaaatactatgagtgagttgctataat-ttaacctctacttttctttatctctttcattgagtgccaaaaactcaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30520888 acactttatagcaaggaatttaccaaatactatgagtgagttgctataatattaacctctacttttctttctctctttcattgagtgccaaaaactcaga 30520987  T
Q  116 tcagcattacatcctttggtcaaatcca 143  Q
    ||||||||||||||||||||||||||||    
T  30520988 tcagcattacatcctttggtcaaatcca 30521015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 10791759 - 10791687
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10791759 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 10791687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 10795997 - 10795925
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10795997 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 10795925  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 8875691 - 8875762
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||| |||| ||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtgg 8875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 11333273 - 11333329
Alignment:
Q  379 tgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    |||||||||||||||||||||||||||||||  || ||  |||||||||||| ||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaatt 11333329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 336 - 494
Target Start/End: Original strand, 33988070 - 33988227
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||  |  |||||||||||| || |    
T  33988070 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatatt-aaat 33988168  T
Q  436 tannnnnnngagggggagagtccactacaatagcttgctattgggtctctcaagtgtcg 494  Q
    ||        |||||||||| ||| | ||||||||||||||||||| | ||||||||||    
T  33988169 tacttttttaagggggagaggccatttcaatagcttgctattgggtttttcaagtgtcg 33988227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 14654447 - 14654348
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14654447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14654348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 14664238 - 14664139
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14664238 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14664139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 14669816 - 14669717
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14669816 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14669717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 14683750 - 14683849
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14683750 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14683849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 14706088 - 14706187
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14706088 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14706187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 14708578 - 14708677
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14708578 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 14652525 - 14652599
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14652599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 14662316 - 14662390
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14662390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 14674481 - 14674555
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674481 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14674555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 14676632 - 14676706
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676632 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 14679859 - 14679933
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679859 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14679933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 14681601 - 14681698
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||||| ||||    
T  14681601 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14681698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 28366306 - 28366234
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28366306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 28366234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 38175637 - 38175565
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38175637 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 38175565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 14716291 - 14716390
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |  |||||||||||| ||||    
T  14716291 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 14716390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 14667218 - 14667144
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14667218 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtgga 14667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 435
Target Start/End: Complemental strand, 11872585 - 11872489
Alignment:
Q  339 tacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||| |  |||||||||||| |||||||||||||||||||||||| |||||||||| |||  |  |||||||||||| ||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaatt 11872489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 37422175 - 37422242
Alignment:
Q  342 ctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||  ||||||||||||| || |||||||||||||||||||||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtgg 37422242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 336 - 494
Target Start/End: Original strand, 40054312 - 40054469
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||  |  ||| |||||||| || |    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatatt-aaat 40054410  T
Q  436 tannnnnnngagggggagagtccactacaatagcttgctattgggtctctcaagtgtcg 494  Q
    ||       ||||||||||| ||||| ||||||||||||||||||  ||| ||||||||    
T  40054411 tacttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcg 40054469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 41841259 - 41841186
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841259 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 41841186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 44878983 - 44879056
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878983 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 44879056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 44880938 - 44880865
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880938 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 44880865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 37679757 - 37679828
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 37679828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 37682052 - 37682130
Alignment:
Q  331 acaagtcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682052 acaaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 37682130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 10944506 - 10944432
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10944506 tcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtgga 10944432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 44582870 - 44582924
Alignment:
Q  353 ttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 407  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 44582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 42220952 - 42220880
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||||| ||| |||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  42220952 tcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 42555190 - 42555091
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    |||||||||||| |  ||||||||  |||||||||| || ||||||| ||||||||||||||| |||||||||| |||  |  |||||||||||| ||||    
T  42555190 tcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatt 42555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 42092051 - 42092093
Alignment:
Q  367 aagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  42092051 aagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 42872557 - 42872514
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatct 379  Q
    ||||||||||||||||||||||||  |||| |||||||||||||    
T  42872557 tcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 37682171 - 37682213
Alignment:
Q  451 gagagtccactacaatagcttgctattgggtctctcaagtgtc 493  Q
    |||||||||| | |||||||||||||| |||||||||||||||    
T  37682171 gagagtccaccaaaatagcttgctattaggtctctcaagtgtc 37682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 7524964 - 7525040
Alignment:
Q  332 caagtcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  7524964 caagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 7525040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 3643640 - 3643739
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |  |||||||||||| ||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 1716559 - 1716486
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716559 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 1716486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 4103249 - 4103318
Alignment:
Q  340 acctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||| || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 4103318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 5350672 - 5350712
Alignment:
Q  369 gtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgg 5350712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 19261197 - 19261152
Alignment:
Q  362 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 407  Q
    |||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261197 agatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 336 - 497
Target Start/End: Complemental strand, 3461249 - 3461089
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||  |  |||||||||||| || |    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatatt-aaat 3461151  T
Q  436 tannnnnnngagggggagagtccactacaatagcttgctattgggtctctcaagtgtcgtct 497  Q
    ||        |||||||||  ||| | ||||||||||||||||||| |||| ||||||||||    
T  3461150 tacttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtct 3461089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 480
Target Start/End: Complemental strand, 11652499 - 11652356
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||  |  |||||||||||| || |    
T  11652499 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatatt-aaat 11652401  T
Q  436 tannnnnnngagggggagagtccactacaatagcttgctattggg 480  Q
    ||       ||||||||||  ||||| ||||||||||||||||||    
T  11652400 tatttttttgagggggagaagccactccaatagcttgctattggg 11652356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 26984773 - 26984700
Alignment:
Q  337 catacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 26984700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 26998846 - 26998773
Alignment:
Q  337 catacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 26998773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 49106636 - 49106563
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106636 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 49106563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 49108740 - 49108668
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  49108740 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 49108668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 50077306 - 50077234
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 408  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  50077306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 50077234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 21503706 - 21503751
Alignment:
Q  364 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 21503751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 48205832 - 48205905
Alignment:
Q  337 catacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    |||||||||||||||||||| ||  |||| ||||||||||||||||||||| | |||||||||| |||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtgga 48205905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 41013651 - 41013579
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    |||| ||||||||||||||||   |||| |||| || ||| |||||||||| |||||||||||||||||||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtgga 41013579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 26982549 - 26982616
Alignment:
Q  343 tttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatca 413  Q
    ||||||||||| |||||  ||||||||||||| |||||   |||| |||||| ||||| ||||||||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatca 26982616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 2841124 - 2841025
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||  |  |||||||||||| ||||    
T  2841124 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaatt 2841025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 32918080 - 32918154
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918080 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 32918154  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 43850049 - 43850122
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850049 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 43850122  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 30733990 - 30734062
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 410  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30733990 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 30734062  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 30732008 - 30732107
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaatt 435  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |  |||||||||||| ||||    
T  30732008 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 30732107  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 9032053 - 9032126
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032053 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 9008021 - 9008088
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9008021 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9008088  T

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Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 9026786 - 9026853
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9026786 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9026853  T

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Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 8973312 - 8973379
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  8973312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 8973379  T

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Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 8979322 - 8979389
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  8979322 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

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Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 9023447 - 9023514
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  9023447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T

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Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 493
Target Start/End: Complemental strand, 19232504 - 19232351
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatcatcgcctcacacgatattcaattta 437  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||   ||| |  |||||| ||||| || |||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatatt-aaatta 19232407  T
Q  438 nnnnnnngagggggagagtccactacaatagcttgctattgggtctctcaagtgtc 493  Q
           ||||||||||  ||||| ||||||||||||||||||  |||||||||||    
T  19232406 cctttttgagggggagaagccacttcaatagcttgctattgggcttctcaagtgtc 19232351  T

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Target: chr2; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 9020847 - 9020920
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtgg 9020920  T

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Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 10763978 - 10763908
Alignment:
Q  343 tttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggatca 413  Q
    |||||||| |||||| |  |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatca 10763908  T

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Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 8984693 - 8984760
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||| |||||||||| ||||    
T  8984693 tcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

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Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 8988457 - 8988522
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    ||||| |||| |||||||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  8988457 ataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 9030405 - 9030460
Alignment:
Q  343 tttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatat 398  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  9030405 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatat 9030460  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 6471813 - 6471747
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatat 405  Q
    |||||||| ||| |||||||||  |||| ||||||||||| ||||||||| |||||||||||||||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatat 6471747  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 8992148 - 8992215
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgat 403  Q
    |||| |||||||| | ||||||||  |||||||||||||||| ||||||||| |||| ||||||||||    
T  8992148 tcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgat 8992215  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 9016493 - 9016563
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatc---agtttaatatctgat 403  Q
    |||||||||  ||| |||||||||  ||||||| |||||||||||||||||||   |||||||||||||||    
T  9016493 tcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgat 9016563  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 9026895 - 9026944
Alignment:
Q  445 gagggggagagtccactacaatagcttgctattgggtctctcaagtgtcg 494  Q
    ||| ||||||| ||| | ||||||||||||||||||| ||||||||||||    
T  9026895 gagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcg 9026944  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 35701893 - 35701962
Alignment:
Q  340 acctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||||||||  | |||||||  ||||||||||| |||| |||| |||| |||||||||| ||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgg 35701962  T

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Target: scaffold0549 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 5504 - 5553
Alignment:
Q  445 gagggggagagtccactacaatagcttgctattgggtctctcaagtgtcg 494  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  5504 gaggtggagagtccaccacaatagcttgctattgggtctctcaagtgtcg 5553  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 27134511 - 27134584
Alignment:
Q  336 tcatacctttctcggccttttggcggagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 409  Q
    |||||||||| ||||||||||  |  ||||||| | ||||||||||||||||  ||||||||||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtgg 27134584  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 8128610 - 8128653
Alignment:
Q  456 tccactacaatagcttgctat--tgggtctctcaagtgtcgtct 497  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  8128610 tccaccacaatagcttgctatattgggtctctcaagtgtcgtct 8128653  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  338 atacctttctcggccttttggcggagatcaagtgtagtatctgttct 384  Q
    ||||||||||| ||||||||||  |||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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