View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7237_low_5 (Length: 338)
Name: NF7237_low_5
Description: NF7237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7237_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42325104 - 42324876
Alignment:
| Q |
1 |
gtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccata |
100 |
Q |
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| T |
42325104 |
gtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccata |
42325005 |
T |
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| Q |
101 |
tatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacattt |
200 |
Q |
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| T |
42325004 |
tatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacattt |
42324905 |
T |
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| Q |
201 |
ggtaggtattttaatggttgaaaaatgcc |
229 |
Q |
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| T |
42324904 |
ggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 42324848 - 42324804
Alignment:
| Q |
247 |
gatgagagagaatataatgacatattgaaattgtaaaacacacag |
291 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacag |
42324804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
20 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
69 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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