View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7237_low_7 (Length: 256)
Name: NF7237_low_7
Description: NF7237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7237_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 35405139 - 35405366
Alignment:
| Q |
10 |
acatcaaaataaaagaaagatgcaacgttattctgtcagactcaaactccaaaatgaacaagcaagaagttcttatgctgcattgctcagttgctcatgt |
109 |
Q |
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| T |
35405139 |
acatcaaaataaaagaaagatgcaacgttattctgtcagactcaaactccaaaatgaacaagcaagaagttcttatgctgcattgctcagttgctcatgt |
35405238 |
T |
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| Q |
110 |
ttattcacttgttagaaataaaatctcatgattgtttgctttaaaagacacttgatagcactttcttatgaatacatgatgagttgatcactttataaat |
209 |
Q |
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| T |
35405239 |
ttattcacttgttagaaataaaatctcatgattgtttgctttaaaagaaacttgatagcactttcttatgaatacatgatgagttgatcactttataaat |
35405338 |
T |
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| Q |
210 |
atttgtttcatagaagaaaagaccttag |
237 |
Q |
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| T |
35405339 |
atttgtttcatagaagaaaagaccttag |
35405366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 35400200 - 35400339
Alignment:
| Q |
10 |
acatcaaaataaaagaaagatgcaacgttattctgtcagactcaaactccaaaatgaacaagcaagaagttcttatgctgcattgctcagttgctcatgt |
109 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
35400200 |
acatcaaaataaaagaaagatgcagtgttattgtgtcagactcaacctccaaaatgaacaagcaagaatttcttatgttgcattgctcagttgctcatgt |
35400299 |
T |
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| Q |
110 |
ttattcacttgttagaaataaaatctcatgattgtttgct |
149 |
Q |
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| T |
35400300 |
ttattcacttgttagaaataaaatctcatgattgtttgct |
35400339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 35400480 - 35400566
Alignment:
| Q |
144 |
tttgctttaaaagacacttgatagcactttcttatgaatacatgatgagttgatcactttataaata-tttgtttcatagaagaaaa |
229 |
Q |
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| T |
35400480 |
tttgcgttgaaagaaacttgatagcactttcttatgaatacatgatgagttgatcactttataaatattttgtttcatagaagaaaa |
35400566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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