View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7238_high_2 (Length: 333)
Name: NF7238_high_2
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 48171663 - 48171353
Alignment:
| Q |
16 |
caagtcaagctgcaaaagcagcaccaaatcaaggaaggggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48171663 |
caagtcaagctgcaaaagcagcaccaaatcaaggaaggggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaagc |
48171564 |
T |
|
| Q |
116 |
agtaggagaaagcatgacgtggatggaagtttaactcagaaaagcagcaaaaaatctgctgcaagagatttaagccagaagagcagtaagaaatctacag |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48171563 |
agtaggagaaagcatgaagtggatggaagtttaactcagaaaagcagcaaaaaatctgctgcaagagatttaagccagaagagcagtaagaaatctacgg |
48171464 |
T |
|
| Q |
216 |
taacaaaggatttaagccaaaagagcagtaaaaaatcttctgcaagagttgtaagtcgatcatctcatagcagcagcgatgaggagtcacacgatggagg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48171463 |
taacaaaggatttaagccaaaagagcagtaaaaaatcttctgcaagagttgtaagtcgatcatctcatagcagcagcgatgaggagtcacacgatggagg |
48171364 |
T |
|
| Q |
316 |
tgttcttctca |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
48171363 |
tgttcttctca |
48171353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University