View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7238_low_1 (Length: 713)

Name: NF7238_low_1
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7238_low_1
NF7238_low_1
[»] scaffold0018 (2 HSPs)
scaffold0018 (1-698)||(34858-35555)
scaffold0018 (1-118)||(47185-47302)


Alignment Details
Target: scaffold0018 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Original strand, 34858 - 35555
Alignment:
Q  1 atcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagtttgtgcctgagtctcaaactttccacaagtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34858 atcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagttcgtgcctgagtctcaaactttccacaagtgc 34957  T
Q  101 ctctattccatccacgaggcttctgaatctgacctaacggtttcaatttattccctggtactgatttcctcgaggtttctatggatgttttcaatgtgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34958 ctctattccatccacgaggcttctgaatctgacctaacggtttcaatttattccctggtactgatttcctcgaggtttctatggatgttttcaatgtgtt 35057  T
Q  201 tccttgtactgaagaagatattgattgttttctcgaggtctctatgaatggtttcacttgattcccttgaacggaagcagatattgaaggttttctcaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058 tccttgtactgaagaagatattgattgttttctcgaggtctctatgaatggtttcacttgattcccttgaacggaagcagatattgaaggttttctcaag 35157  T
Q  301 ttgtctatttgaccacggttgatattaatatcactagaagatgacaaagtaacactatttctcttttgcatttgaaatttcttttgaaaaagtcgaaccc 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35158 ttgtctatttgaccacggttgatattaatatcactagaagacgacaaagtaacaccatttctcttttgcatttgaaatttcttttgaaaaagtcgaaccc 35257  T
Q  401 gttcaagctcagacttaaacctattggcaacttgttttctttgaaaagctgacaattttgacaaaggaacaagttgcattggaacaccatacgcccctcg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35258 gttcaagctcagacttaaacctattggcaacttgttttctttgaaaagctgacaattttgacaaaggaacaagttgcattggaacaccatacgcccctcg 35357  T
Q  501 tcgacctgaattgatcaaagtaacacatttccgagtatcctcctcctcggaaacagtaagttcagtagccgagccatcggatataactgtttcacaatag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35358 tcgacctgaattgatcaaagtaacacatttccgagtatcctcctcctcggagacagtaagttcagtagccgagccatcggatacaactgtttcacaatag 35457  T
Q  601 cctccagaatgcctactcttagccattatttattgcaacgaccaaaatcaacaatcaatcaatcactaaactcaaacagccccgcaaattagatgtcc 698  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  35458 cctccagaatgcctactcttagccattatttattacgacgaccacaatcaaaaatcaaccaatcactaaattcaaacagccccgcaaattagatgtcc 35555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47185 - 47302
Alignment:
Q  1 atcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagtttgtgcctgagtctcaaactttccacaagtgc 100  Q
    |||||| || |||| |||||||| ||||||||||||||||  ||||||||  |   |||| ||| ||| ||| || ||| ||||||||||||| ||||||    
T  47185 atcaaccgtgtcaaaagtgactcacaatctttcatcaacaaagaatttgccatggtaggcgaacgagtctgtaccggagcctcaaactttccagaagtgc 47284  T
Q  101 ctctattccatccacgag 118  Q
    | | ||||||||| ||||    
T  47285 cccgattccatccgcgag 47302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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