View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7238_low_10 (Length: 229)
Name: NF7238_low_10
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 42475769 - 42475574
Alignment:
| Q |
10 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatatgacaaagcaga |
109 |
Q |
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| T |
42475769 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatacgacaaagcaga |
42475670 |
T |
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| Q |
110 |
gaaaattttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaat |
205 |
Q |
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| T |
42475669 |
gaaaattttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaat |
42475574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 42468353 - 42468267
Alignment:
| Q |
10 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatata |
97 |
Q |
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| T |
42468353 |
aacctgtgagatgaaatatccacttac-gaatcaaaatgctgcattcaaatatagatatcttgttagacaatgatctttctccatata |
42468267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 42481016 - 42480969
Alignment:
| Q |
150 |
aaaccaagatcaatttccccaatcctcatttgaaaataagatataaat |
197 |
Q |
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|||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
42481016 |
aaacaaagatcaatttcccaagccctcatttgaaaataagatataaat |
42480969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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