View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7238_low_11 (Length: 215)
Name: NF7238_low_11
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 9168066 - 9167865
Alignment:
| Q |
1 |
ctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatgaattacgacagcggaggtcttgta |
100 |
Q |
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| T |
9168066 |
ctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatgaattacgacagcggaggtcttgta |
9167967 |
T |
|
| Q |
101 |
tgtacagttgaatattgcacaactccattgggaattgatatcagttgtggtaagtagagttcatcttttcatattgaagaatattacttactattactat |
200 |
Q |
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| T |
9167966 |
tgtacagttgactattgcacaactccattgggaattgatatcagttgtggtaagtagacttcatcttttcattttgaagaatattacttactattattat |
9167867 |
T |
|
| Q |
201 |
ct |
202 |
Q |
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| T |
9167866 |
ct |
9167865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 9307331 - 9307502
Alignment:
| Q |
1 |
ctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatgaattacgacagcggaggtcttgta |
100 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||| |||||||| ||| | |||||||||| |||| ||||| || |||| ||||||| |
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| T |
9307331 |
ctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgacaataacaatcaaaactgcttcatggattacaacgccggatatcttgta |
9307430 |
T |
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| Q |
101 |
tgtacagttgaatattgcacaactccattgggaattgatatcagttgtggtaagtagagttcatcttttcat |
172 |
Q |
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| T |
9307431 |
tgtcaaaatgatgattgcataactccattgggacttcaaataaattgtggtaagtagatttcatcttttcat |
9307502 |
T |
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