View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7238_low_2 (Length: 414)
Name: NF7238_low_2
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 25 - 408
Target Start/End: Complemental strand, 6517175 - 6516792
Alignment:
| Q |
25 |
ttctatactcagtacactttaaagccagcttagcacatgccaaagcctcttcaacaggacaatttggtacatttggatcaagcacgttcatgaagtttct |
124 |
Q |
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| T |
6517175 |
ttctatactcaatacactttaaagccagcttagcacatgccaaagcctcttcaacaggacaatttggtacatttggatcaagcacgttcatgaagtttcc |
6517076 |
T |
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| Q |
125 |
tttctttatagcttcttcaactaaatgagacaaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttc |
224 |
Q |
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||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517075 |
tttttttatagcttcttcaactatatgagataaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttc |
6516976 |
T |
|
| Q |
225 |
acacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgagtggttttgttggctatcgaag |
324 |
Q |
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| T |
6516975 |
acacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagctgcgcctgtcatgcgatattgagtggttttgttggctattgaag |
6516876 |
T |
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| Q |
325 |
caggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttcatctcac |
408 |
Q |
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| T |
6516875 |
caggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcac |
6516792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 400
Target Start/End: Complemental strand, 42674191 - 42673949
Alignment:
| Q |
158 |
acccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcagga |
257 |
Q |
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| T |
42674191 |
acccattggagtctttccagtaatgatttgtagaagcataacacctaatgaatatatgtctgattttacgcccaatagtcctgtttgttgatactccgga |
42674092 |
T |
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| Q |
258 |
tcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgagtggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactga |
357 |
Q |
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| T |
42674091 |
tcaatataaaaaaatgttccggctgcatttgtcttgtgatattcggtagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctga |
42673992 |
T |
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| Q |
358 |
tcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
400 |
Q |
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| T |
42673991 |
tcttgcttacgtagtttctgtctaagagaatgtttgctggttt |
42673949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 50439260 - 50439406
Alignment:
| Q |
155 |
caaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactca |
254 |
Q |
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| T |
50439260 |
caaacccattggtgattttgctgtcaaaatttgaaggaaaatgattccaagtgaatatacatctgatttcacacctaacattcctgtttgctgatactca |
50439359 |
T |
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| Q |
255 |
ggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
301 |
Q |
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| T |
50439360 |
ggatctatataacagaatgttcctgctgttgccgtcatgcgatattg |
50439406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 48235715 - 48235755
Alignment:
| Q |
240 |
gtttgttgatactcaggatcaatgtagcaaaatgttccagc |
280 |
Q |
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| T |
48235715 |
gtttgttgatactcgggatcaatataacaaaatgttccagc |
48235755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 3686683 - 3686625
Alignment:
| Q |
342 |
aaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
400 |
Q |
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| T |
3686683 |
aaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggttt |
3686625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 3686780 - 3686724
Alignment:
| Q |
245 |
ttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
301 |
Q |
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| T |
3686780 |
ttgatactctggatcaatgtaacataatgttccagctgcttcagtcatgtgatattg |
3686724 |
T |
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