View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7238_low_3 (Length: 382)

Name: NF7238_low_3
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7238_low_3
NF7238_low_3
[»] chr6 (2 HSPs)
chr6 (180-382)||(6910013-6910216)
chr6 (1-203)||(6910013-6910216)
[»] chr1 (4 HSPs)
chr1 (153-203)||(15784224-15784275)
chr1 (180-230)||(15784224-15784275)
chr1 (161-203)||(11893084-11893126)
chr1 (180-222)||(11893084-11893126)
[»] chr4 (4 HSPs)
chr4 (43-88)||(52707572-52707617)
chr4 (295-340)||(52707572-52707617)
chr4 (180-220)||(21731783-21731823)
chr4 (163-203)||(21731783-21731823)
[»] chr3 (4 HSPs)
chr3 (295-340)||(43526492-43526537)
chr3 (43-88)||(43526492-43526537)
chr3 (48-88)||(24627464-24627504)
chr3 (295-335)||(24627464-24627504)
[»] chr2 (2 HSPs)
chr2 (43-88)||(41796073-41796118)
chr2 (295-340)||(41796073-41796118)
[»] chr8 (6 HSPs)
chr8 (295-335)||(28710063-28710103)
chr8 (48-88)||(28710063-28710103)
chr8 (295-335)||(28717410-28717450)
chr8 (48-88)||(28717410-28717450)
chr8 (295-343)||(41314296-41314344)
chr8 (40-88)||(41314296-41314344)
[»] chr7 (2 HSPs)
chr7 (308-340)||(31512035-31512067)
chr7 (43-75)||(31512035-31512067)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 180 - 382
Target Start/End: Original strand, 6910013 - 6910216
Alignment:
Q  180 aagcacttatcatgataagtgcttgtgatataaactgtttatcaaacagggttcaatcagctagcttatctgctatataaactatgtttttcatctatcc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6910013 aagcacttatcatgataagtgcttgtgatataaactgtttatcaaacagggttcaatcagctagcttatctgctatataaactatgtttttcatctatcc 6910112  T
Q  280 tttataagtccattcgctataagctaagttatcaactatctgcta-tttttaccaaatagagtcacaagcatgtaagaaaaatataagctcaaaatttta 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6910113 tttataagtccattcgctataagctaagttatcaactatctgctattttttaccaaatagagtcataagcatgtaagaaaaatataagctcaaaatttta 6910212  T
Q  379 tctc 382  Q
    ||||    
T  6910213 tctc 6910216  T

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Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 6910216 - 6910013
Alignment:
Q  1 gagataaaattttgagcttatatttttcttacatgcttgtgactctatttggtaaaaa-tagcagatagttgataacttagcttatagcgaatggactta 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6910216 gagataaaattttgagcttatatttttcttacatgcttatgactctatttggtaaaaaatagcagatagttgataacttagcttatagcgaatggactta 6910117  T
Q  100 taaaggatagatgaaaaacatagtttatatagcagataagctagctgattgaaccctgtttgataaacagtttatatcacaagcacttatcatgataagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6910116 taaaggatagatgaaaaacatagtttatatagcagataagctagctgattgaaccctgtttgataaacagtttatatcacaagcacttatcatgataagt 6910017  T
Q  200 gctt 203  Q
    ||||    
T  6910016 gctt 6910013  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 15784224 - 15784275
Alignment:
Q  153 ccctgtttg-ataaacagtttatatcacaagcacttatcatgataagtgctt 203  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  15784224 ccctgtttggataaacagtttatatcacaagcacttattatgataagcgctt 15784275  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 15784275 - 15784224
Alignment:
Q  180 aagcacttatcatgataagtgcttgtgatataaactgtttat-caaacaggg 230  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||||||    
T  15784275 aagcgcttatcataataagtgcttgtgatataaactgtttatccaaacaggg 15784224  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 11893084 - 11893126
Alignment:
Q  161 gataaacagtttatatcacaagcacttatcatgataagtgctt 203  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  11893084 gataaacagcttatgtcacaagcacttatcatgataagcgctt 11893126  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 11893126 - 11893084
Alignment:
Q  180 aagcacttatcatgataagtgcttgtgatataaactgtttatc 222  Q
    |||| ||||||||||||||||||||||| |||| |||||||||    
T  11893126 aagcgcttatcatgataagtgcttgtgacataagctgtttatc 11893084  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 52707572 - 52707617
Alignment:
Q  43 ctctatttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||    
T  52707572 ctctatttggtaaaaatagcggatagctgataagttagcttatagc 52707617  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 52707617 - 52707572
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaatagag 340  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||    
T  52707617 gctataagctaacttatcagctatccgctatttttaccaaatagag 52707572  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 21731783 - 21731823
Alignment:
Q  180 aagcacttatcatgataagtgcttgtgatataaactgttta 220  Q
    ||||||||||||||||||| ||||||| ||||| |||||||    
T  21731783 aagcacttatcatgataagcgcttgtgctataagctgttta 21731823  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 21731823 - 21731783
Alignment:
Q  163 taaacagtttatatcacaagcacttatcatgataagtgctt 203  Q
    ||||||| ||||| ||||||| |||||||||||||||||||    
T  21731823 taaacagcttatagcacaagcgcttatcatgataagtgctt 21731783  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 43526492 - 43526537
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaatagag 340  Q
    ||||| |||||| |||||||||||| ||||||||||||||| ||||    
T  43526492 gctatcagctaacttatcaactatccgctatttttaccaaacagag 43526537  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 43526537 - 43526492
Alignment:
Q  43 ctctatttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    |||| ||||||||||||||| |||||||||||| |||||| |||||    
T  43526537 ctctgtttggtaaaaatagcggatagttgataagttagctgatagc 43526492  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 24627464 - 24627504
Alignment:
Q  48 tttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  24627464 tttggtaaaaatagcggatagttgataagctagcttatagc 24627504  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 24627504 - 24627464
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaa 335  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  24627504 gctataagctagcttatcaactatccgctatttttaccaaa 24627464  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 41796073 - 41796118
Alignment:
Q  43 ctctatttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    |||| ||||||||||||||||||||| |||||| |||||| |||||    
T  41796073 ctctgtttggtaaaaatagcagatagctgataagttagctgatagc 41796118  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 41796118 - 41796073
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaatagag 340  Q
    ||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  41796118 gctatcagctaacttatcagctatctgctatttttaccaaacagag 41796073  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 28710063 - 28710103
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaa 335  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  28710063 gctatcagctaacttatcaactatccgctatttttaccaaa 28710103  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 28710103 - 28710063
Alignment:
Q  48 tttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    ||||||||||||||| |||||||||||| |||||| |||||    
T  28710103 tttggtaaaaatagcggatagttgataagttagctgatagc 28710063  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 28717410 - 28717450
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaa 335  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  28717410 gctatcagctaacttatcaactatccgctatttttaccaaa 28717450  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 28717450 - 28717410
Alignment:
Q  48 tttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    ||||||||||||||| |||||||||||| |||||| |||||    
T  28717450 tttggtaaaaatagcggatagttgataagttagctgatagc 28717410  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 41314296 - 41314344
Alignment:
Q  295 gctataagctaagttatcaactatctgctatttttaccaaatagagtca 343  Q
    ||||| |||||| |||||| ||||| ||||||||||||||| |||||||    
T  41314296 gctatcagctaacttatcagctatccgctatttttaccaaacagagtca 41314344  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 41314344 - 41314296
Alignment:
Q  40 tgactctatttggtaaaaatagcagatagttgataacttagcttatagc 88  Q
    ||||||| ||||||||||||||| ||||| |||||| |||||| |||||    
T  41314344 tgactctgtttggtaaaaatagcggatagctgataagttagctgatagc 41314296  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 31512035 - 31512067
Alignment:
Q  308 ttatcaactatctgctatttttaccaaatagag 340  Q
    |||||||||||||||||||||||||||| ||||    
T  31512035 ttatcaactatctgctatttttaccaaacagag 31512067  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 31512067 - 31512035
Alignment:
Q  43 ctctatttggtaaaaatagcagatagttgataa 75  Q
    |||| ||||||||||||||||||||||||||||    
T  31512067 ctctgtttggtaaaaatagcagatagttgataa 31512035  T

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