View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7238_low_5 (Length: 331)
Name: NF7238_low_5
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 44000835 - 44001136
Alignment:
| Q |
21 |
ttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgt |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
44000835 |
ttaccggtgaagatactcctgcaactccgatgcatctgcaagtcctggaaatctctaatttcaaatgatagtacattcgcaaagaagcagctttgcatgt |
44000934 |
T |
|
| Q |
121 |
caaagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctac |
220 |
Q |
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| T |
44000935 |
caaagaagcgtctcattgtaagcagtgtaaacgatccagatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctac |
44001034 |
T |
|
| Q |
221 |
tgtcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattataaggcaataatttgg-aatttgctcttgccacggtattctc |
319 |
Q |
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| T |
44001035 |
tgtcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattatacggcaataatttggaaatttgctcttgccacggtattctc |
44001134 |
T |
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| Q |
320 |
tg |
321 |
Q |
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|| |
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| T |
44001135 |
tg |
44001136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 43991276 - 43991518
Alignment:
| Q |
20 |
attaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatg |
119 |
Q |
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| T |
43991276 |
attaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctcttatctcgaatgatcgtaaatttgcaaagaagcaccttcgcatg |
43991375 |
T |
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| Q |
120 |
tcaaaga----agcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaac |
215 |
Q |
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| T |
43991376 |
tcaaagagggtagc-actcattgtaagcagtgtaaacgactcaggtgaaccacttttttgggattcctcaatttcctctgttttcagcaatgcatccaac |
43991474 |
T |
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| Q |
216 |
tct---actgtcacacagactcaactcaattgcccaatttcctt |
256 |
Q |
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| T |
43991475 |
tctagcagcgtcacacagactcaactcatttgcccattttcctt |
43991518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 43996857 - 43997100
Alignment:
| Q |
21 |
ttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgt |
120 |
Q |
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||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||| | || ||| | ||| ||||||||||||||||||||| |
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| T |
43996857 |
ttaccggtgaagatacttctgcagctccgatgcatatgcaagtcctggaaaactctaatcaccaacgatccttaattttcaaagaagcaccttcgcatgt |
43996956 |
T |
|
| Q |
121 |
caaagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactct-- |
218 |
Q |
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| T |
43996957 |
caaagaagcatctcattgtaagcagtttaaacgactcaggtgaatcatttctttgggattcatcaatttcctctgttttcagcaatgcatccaactctag |
43997056 |
T |
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| Q |
219 |
-actgtcacacagactcaactcaattgcccaatttccttcaata |
261 |
Q |
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| T |
43997057 |
cagcgtcacacagacacaactcaagtgcccaatttccttgaata |
43997100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 43687088 - 43687002
Alignment:
| Q |
50 |
atgcatctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcat |
136 |
Q |
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||||||||||||||||||||||||| |||| || |||||| ||| |||| |||||||||||||||||||||||||||| | |||||| |
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| T |
43687088 |
atgcatctgcaagtcctggaaatctgtaatctcgaatgatcgtaaattctcaaagaagcaccttcgcatgtcaaagaaccatctcat |
43687002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 7432894 - 7432842
Alignment:
| Q |
24 |
ccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
76 |
Q |
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||||||||| | ||||| ||||| ||||||||||||||||| ||||| ||||| |
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| T |
7432894 |
ccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctct |
7432842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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