View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7238_low_6 (Length: 311)
Name: NF7238_low_6
Description: NF7238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7238_low_6 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 32598560 - 32598252
Alignment:
| Q |
4 |
atcaacgacaaataaccttaaaaagattagtacaatacaatattcagactcttgaatgagctccttctcctcgttgtacttcatatttcatgcttgttct |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||| ||||||||| |||||||||||||||||||||| || | |
|
|
| T |
32598560 |
atcaacgacaaataacgttaaaaagattagtacaatacgatgttcagactcttgaaggagcttcttctcctcattgtacttcatatttcatgcttattgt |
32598461 |
T |
|
| Q |
104 |
tctgttttccactttagtgcacttaatatctagcatgtatttatcatctttggtgttgaatacataatannnnnnnnaaaaa-taaaacgtgatagatat |
202 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32598460 |
tctgtttcctactttaatgcacttaatatctagcatgtatttaccattttttgtgttgaatacataatattttttttaaaaaataaaacgtgatagatat |
32598361 |
T |
|
| Q |
203 |
taagtattcaacagaaaagatggtaataaagccccgttgatctcatacctaagtaacaacctaattttgggtagagatattgaatgaataattttggaca |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32598360 |
taagtattcaacacaaaagatggtaataaagcccatttgatctcatacctaagtaacaacctaattttgggtggagatattgaatgaataattttggaca |
32598261 |
T |
|
| Q |
303 |
tatgttctt |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
32598260 |
tatgttctt |
32598252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 32603517 - 32603403
Alignment:
| Q |
196 |
tagatattaagtattcaacagaaaagatggtaataaagccccgttgatctcatacctaagtaacaacctaattttgggtagagatattgaatgaataatt |
295 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||| | |||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32603517 |
tagatattaagtattcattacaaaagatggtaatgaagcccacagg-tctcatgcccaagtaacaacctaattttgggtagatatattgaatgaataatt |
32603419 |
T |
|
| Q |
296 |
ttggacatatgttctt |
311 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
32603418 |
taggacatatgttctt |
32603403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 32599084 - 32598990
Alignment:
| Q |
4 |
atcaacgacaaataaccttaaaaagattagtacaatacaatattcagactcttgaatgagctccttctcctcgttgtacttcatatttcatgcttgttct |
103 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| || |||| ||||||||| |||||||| ||| |||||||||||||| || |||||||||||| |
|
|
| T |
32599084 |
atcaatgacagataacgttaaaaagattagtaccatg-----ttcaaactcttgaaggagctcctcctcttcgttgtacttcattttccatgcttgttct |
32598990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University