View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7239_high_1 (Length: 638)
Name: NF7239_high_1
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 43 - 625
Target Start/End: Original strand, 41359299 - 41359864
Alignment:
| Q |
43 |
atttacctctgttgactataaagaaaaatagaatcattttgtcgaggtactaaatggtcagagtctgttttgcatgagcagtgtttataaacataaataa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359299 |
atttacctctgttgactataaagaaaaatagaatcattttgtcgaggtactaaatggtcagagtctgttttgcatgagcagtgtttataaacataaataa |
41359398 |
T |
|
| Q |
143 |
ttgtatttgagacaatgttcataatactttctcattaatataggcactcaatcatggttttaaattgttgtttgcaattgaataattttgaattttccag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41359399 |
ttgtatttgagacaatgttcataatactttctcaataatataggcactcaatcatggttttaaattgttgtttgcaattgaataattttgaattttcc-g |
41359497 |
T |
|
| Q |
243 |
cgactccattgtaaccacaatatcgactgtattttcttgcaatatgaaagaccacaatgtaacagcgaccacaattttaaaccatgcgctcaacaatcat |
342 |
Q |
| |
|
|| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359498 |
cggctccattgtaaccacaatatcaaccgtattttcttgcaata---------------taacagcgaccacaattttaaaccatgcgctcaacaatcat |
41359582 |
T |
|
| Q |
343 |
aaggctaggtgctaggccttccattttgagggacaggctcggctcatacccgtgtttgatttctgatggtggtatactttttggttaaacttctcgaact |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359583 |
aaggctaggtgctaggccttccattttgagggacaggctcggctcatacccgtgtttgatttctgatggtggtatactttttggttaaacttctcgaact |
41359682 |
T |
|
| Q |
443 |
ttctgaccaacacaagttagtctagagaatcattttcaatcagatgtattctctttgatctgaaatataaatnnnnnnnnnnnntttcgaacaaatacat |
542 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41359683 |
ttccgaccaacacaagttagtctagagaatcattttccatgagatgtattctctttgatctgaaatataaat-aaaaagtcaaatttcgaacaaatacat |
41359781 |
T |
|
| Q |
543 |
ttgaatttttgtgtatatttaggagtgtaggagtattataccattcaaaaatatcaagtgtgtcttagaacctatgaatgatg |
625 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359782 |
ttgaatttttgtgtatatttagaagtgtaggagtattataccattcaaaaatatcaagtgtgtcttagaacctatgaatgatg |
41359864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University