View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_high_15 (Length: 241)
Name: NF7239_high_15
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_high_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 31804372 - 31804525
Alignment:
| Q |
88 |
acaaagtgattgtacaaatattatttctctatttattatcaatccaaaagtaaaaaattatttgcaagtatgatttcaacttttaaatttcttgcatgtc |
187 |
Q |
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| T |
31804372 |
acaaagtgattgtacaaatatcatttctctatttattatcgatccaaaagtaaaaagttatttgcaagtatgatttcaacttttaaatttcttgcatgtc |
31804471 |
T |
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| Q |
188 |
tacatagatattgacaatttctcgtgagggtgagtgtaaaatctgatttactgt |
241 |
Q |
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| T |
31804472 |
tacgtagatattgacaatttctagtgagggtgagtgtaaaatctgatttactgt |
31804525 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 17363256 - 17363223
Alignment:
| Q |
90 |
aaagtgattgtacaaatattatttctctatttat |
123 |
Q |
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| T |
17363256 |
aaagtgattgtacaaatatcatttctctatttat |
17363223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 34271529 - 34271568
Alignment:
| Q |
84 |
tgttacaaagtgattgtacaaatattatttctctatttat |
123 |
Q |
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| T |
34271529 |
tgttacaaagtggttgtacaaatatcatttctctatttat |
34271568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 11306730 - 11306688
Alignment:
| Q |
84 |
tgttacaaagtgattgtacaaatattatttctctatttattat |
126 |
Q |
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| T |
11306730 |
tgttaaaaagtgattgtacaaatatcatttctcaatttattat |
11306688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 29402212 - 29402179
Alignment:
| Q |
86 |
ttacaaagtgattgtacaaatattatttctctat |
119 |
Q |
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| T |
29402212 |
ttacaaagtgattgtacaaatatcatttctctat |
29402179 |
T |
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