View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_high_2 (Length: 506)

Name: NF7239_high_2
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_high_2
NF7239_high_2
[»] chr4 (3 HSPs)
chr4 (1-342)||(1074204-1074546)
chr4 (328-491)||(1074022-1074186)
chr4 (127-291)||(28252032-28252198)
[»] chr5 (4 HSPs)
chr5 (10-88)||(683394-683472)
chr5 (188-284)||(8851864-8851960)
chr5 (11-86)||(806649-806725)
chr5 (235-279)||(16172987-16173031)
[»] chr7 (10 HSPs)
chr7 (171-292)||(8677511-8677632)
chr7 (6-84)||(7294118-7294196)
chr7 (247-292)||(6439449-6439494)
chr7 (10-87)||(35861685-35861762)
chr7 (241-301)||(3835080-3835140)
chr7 (373-409)||(34942579-34942615)
chr7 (241-300)||(34633666-34633725)
chr7 (248-282)||(42949286-42949320)
chr7 (242-291)||(21184768-21184817)
chr7 (55-88)||(28117707-28117740)
[»] chr3 (9 HSPs)
chr3 (8-86)||(8787555-8787633)
chr3 (10-86)||(11283400-11283473)
chr3 (28-81)||(28596846-28596899)
chr3 (6-78)||(9095169-9095241)
chr3 (28-85)||(14748159-14748216)
chr3 (1-81)||(31175467-31175547)
chr3 (249-300)||(43501975-43502026)
chr3 (241-298)||(43303767-43303824)
chr3 (235-279)||(34844399-34844443)
[»] chr1 (5 HSPs)
chr1 (28-89)||(26392975-26393036)
chr1 (10-73)||(6556523-6556586)
chr1 (8-86)||(4948956-4949034)
chr1 (8-81)||(24446879-24446952)
chr1 (8-68)||(3332614-3332674)
[»] scaffold1527 (1 HSPs)
scaffold1527 (16-88)||(199-271)
[»] chr8 (20 HSPs)
chr8 (16-88)||(23161474-23161546)
chr8 (16-88)||(23162125-23162197)
chr8 (16-88)||(23162776-23162848)
chr8 (16-88)||(23163427-23163499)
chr8 (16-88)||(23164078-23164150)
chr8 (16-88)||(23164729-23164801)
chr8 (16-88)||(23165380-23165452)
chr8 (16-88)||(23166031-23166103)
chr8 (15-81)||(32659722-32659788)
chr8 (241-298)||(38463891-38463948)
chr8 (235-285)||(42678094-42678144)
chr8 (249-297)||(6021173-6021221)
chr8 (246-298)||(20870741-20870793)
chr8 (16-68)||(23162006-23162058)
chr8 (16-68)||(23162657-23162709)
chr8 (16-68)||(23163308-23163360)
chr8 (16-68)||(23163959-23164011)
chr8 (16-68)||(23164610-23164662)
chr8 (16-68)||(23165261-23165313)
chr8 (16-68)||(23165912-23165964)
[»] chr2 (7 HSPs)
chr2 (141-217)||(35103696-35103772)
chr2 (8-85)||(23058309-23058386)
chr2 (8-79)||(30943012-30943083)
chr2 (8-49)||(9394787-9394828)
chr2 (36-81)||(10408633-10408678)
chr2 (54-83)||(34761188-34761217)
chr2 (235-279)||(26482121-26482165)
[»] chr6 (7 HSPs)
chr6 (1-80)||(8109396-8109476)
chr6 (10-88)||(2046787-2046865)
chr6 (27-79)||(19050520-19050572)
chr6 (22-81)||(22994082-22994141)
chr6 (22-81)||(23794257-23794316)
chr6 (36-88)||(32609171-32609225)
chr6 (35-80)||(27834761-27834806)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 1074546 - 1074204
Alignment:
Q  1 gattgtaaatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtccttttaannnnnnng 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |    
T  1074546 gattgtaaatatttcaaaatggtctctgactctaataaactgtcaagttgccccctatatttaaccacttactatcaattaagtccttttaatttttttg 1074447  T
Q  101 gaaactcggtatccaactcaatgacagactaatccgggatcaatcccaccgtccactagcagggtcacac-ttgaagtcagagcaaaactttgtatggac 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||||||||    
T  1074446 gaaactcagtatccaactcaatgacagactaatccgggatcaatcccaccgtccactagcaggggcaaaaattgaagtcagagcaaaactttgtatggac 1074347  T
Q  200 tgacctaacacaaaaattataggcacctaaagaattcgaagctgagaactagagaggagcacactcctaggtctcaagccttcacctccaggcgaacccc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  1074346 tgacctaacacaaaaattataggcacctaaagaattcgaagctgagaactagagaggagcacactcctaggtctcaagccttcaccaccaggccaacccc 1074247  T
Q  300 tgagtttattaagtccaatggtttaacaacttcctatcaattt 342  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1074246 tgagtttattaagtccaatggttcaacaacttcctatcaattt 1074204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 328 - 491
Target Start/End: Complemental strand, 1074186 - 1074022
Alignment:
Q  328 acttcctatcaatttcgtcgcgagtaaaatttgacttagtaacatacctttttgaaatatccataatctcaaa-gacttattttagaacaactaccaatt 426  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  1074186 acttactatcaatttcgtcgcgagtaaaatttgacttagtaacatacctttttgaaatattcataatctcaaaagacttattttagaacaactaccaatt 1074087  T
Q  427 tggtggtttacttgttaataatgatgagttctacacataacacaatcactgatatactaaaatgt 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1074086 tggtggtttacttgttaataatgatgagttctacacataacacaatcactgatatactaaaatgt 1074022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 28252032 - 28252198
Alignment:
Q  127 gactaatccggg--atcaatcccaccgtccactagcagggtcacacttgaagtcagagcaaaactttgtatggactgacctaacacaaaaattataggca 224  Q
    ||||||||||||  | |||||||||| ||||||||| |||   || |||||| ||||||| | | ||||||| |||| || |||||| ||||| |  |||    
T  28252032 gactaatccggggaaccaatcccaccatccactagcgggggttcaattgaagccagagcagagccttgtatgaactggcccaacacagaaatttttagca 28252131  T
Q  225 cctaaagaattcgaagctgagaactagagaggagcacactcctaggtctcaagccttcacctccagg 291  Q
    |||  || ||| ||| |||| | ||||||||||||||| |   ||||||||||||| |||| |||||    
T  28252132 cctggaggatttgaacctgaaacctagagaggagcacattttgaggtctcaagcctacaccaccagg 28252198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 683394 - 683472
Alignment:
Q  10 tatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||||||||| |||||||||||||| |||| ||||||||||  || |||||||||||||||| ||||||||||||||||    
T  683394 tatttcaaaaaggtctctgactctattaaattgtcaagttgatccttatatttaaccacttattatcaattaagtcctt 683472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 8851960 - 8851864
Alignment:
Q  188 ctttgtatggactgacctaacacaaaaattataggcacctaaagaattcgaagctgagaactagagaggagcacactcctaggtctcaagccttcac 284  Q
    ||||||||||||||||| ||||||| |||| | || ||||    |||| ||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  8851960 ctttgtatggactgacccaacacaagaattgttggtacctgggaaatttgaacctgagacctagagaggaacacactcctaggtctcaagccttcac 8851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 806725 - 806649
Alignment:
Q  11 atttcaaaatggtctctgactctaataaactgtcaagttggcccct-atatttaaccacttactatcaattaagtcc 86  Q
    ||||||||| |||| || |||||   |||||||||||||||  | | ||||||||||||||||||||||| ||||||    
T  806725 atttcaaaaaggtccctaactctttaaaactgtcaagttgggtctttatatttaaccacttactatcaataaagtcc 806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 16172987 - 16173031
Alignment:
Q  235 tcgaagctgagaactagagaggagcacactcctaggtctcaagcc 279  Q
    ||||| |||||| || |||||||||||||||| ||||||||||||    
T  16172987 tcgaacctgagaccttgagaggagcacactccaaggtctcaagcc 16173031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 8677511 - 8677632
Alignment:
Q  171 ttgaagtcagagcaaaactttgtatggactgacctaacacaaaaattataggcacctaaagaattcgaagctgagaactagagaggagcacactcctagg 270  Q
    |||||| || ||||||||| |||||||||||||||||||||  |||| |  | ||||   |  |||||| |||||| |||||||||||||| ||||||||    
T  8677511 ttgaaggcatagcaaaactctgtatggactgacctaacacaggaattgtttgtaccttggggcttcgaacctgagacctagagaggagcaccctcctagg 8677610  T
Q  271 tctcaagccttcacctccaggc 292  Q
    |||||||||| |||| ||||||    
T  8677611 tctcaagcctacaccaccaggc 8677632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 7294118 - 7294196
Alignment:
Q  6 taaatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagt 84  Q
    ||||| ||| |||| |||||||||||| | |||||||||||||| |  | |||||||||| ||||||||||||||||||    
T  7294118 taaatgttttaaaaaggtctctgactcaattaaactgtcaagttagttcgtatatttaacaacttactatcaattaagt 7294196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 6439449 - 6439494
Alignment:
Q  247 actagagaggagcacactcctaggtctcaagccttcacctccaggc 292  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  6439449 actagagaggagcaaactcctaggtctcaagccttcaccgccaggc 6439494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 35861762 - 35861685
Alignment:
Q  10 tatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcct 87  Q
    |||||||||| ||||  |||||||| |||| || ||||||||  | |||||| ||||||| |||||||||||||||||    
T  35861762 tatttcaaaaaggtccttgactctattaaagtggcaagttggttcatatattcaaccactcactatcaattaagtcct 35861685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 3835080 - 3835140
Alignment:
Q  241 ctgagaactagagaggagcacactcctaggtctcaagccttcacctccaggcgaacccctg 301  Q
    |||||| |||||||| |||||||||||| ||| |||||||||||| | |||| ||||||||    
T  3835080 ctgagacctagagagaagcacactcctaagtcccaagccttcaccactaggccaacccctg 3835140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 34942615 - 34942579
Alignment:
Q  373 acctttttgaaatatccataatctcaaagacttattt 409  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34942615 acctttttgaaatattcataatctcaaagacttattt 34942579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 34633725 - 34633666
Alignment:
Q  241 ctgagaactagagaggagcacactcctaggtctcaagccttcacctccaggcgaacccct 300  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||  |||||| |||||||    
T  34633725 ctgagatctagagaggtgcacactcctaggtcccaaaccttcactaccaggccaacccct 34633666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 42949286 - 42949320
Alignment:
Q  248 ctagagaggagcacactcctaggtctcaagccttc 282  Q
    ||||||||||||||||||||||||| |||||||||    
T  42949286 ctagagaggagcacactcctaggtcccaagccttc 42949320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 21184817 - 21184768
Alignment:
Q  242 tgagaactagagaggagcacactcctaggtctcaagccttcacctccagg 291  Q
    ||||| ||||||||||||||||| ||||||| ||| |||||||| |||||    
T  21184817 tgagacctagagaggagcacactactaggtcacaaaccttcaccaccagg 21184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 28117740 - 28117707
Alignment:
Q  55 ctatatttaaccacttactatcaattaagtcctt 88  Q
    |||||||||||||||||||||||| |||||||||    
T  28117740 ctatatttaaccacttactatcaactaagtcctt 28117707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 8787633 - 8787555
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcc 86  Q
    |||||||||||| |||||||||||||| |||| ||||| ||| | |||||||||||| ||| |||||||||| ||||||    
T  8787633 aatatttcaaaaaggtctctgactctattaaagtgtcaggtttgtccctatatttaatcacctactatcaatcaagtcc 8787555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 11283473 - 11283400
Alignment:
Q  10 tatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcc 86  Q
    ||||||||||||||||||||||||  |||| | ||||||||  ||||||||||||| |||| |||||||||||||||    
T  11283473 tatttcaaaatggtctctgactct--taaaatatcaagttgatccctatatttaactactt-ctatcaattaagtcc 11283400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 28596899 - 28596846
Alignment:
Q  28 gactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  28596899 gactctattaaactgtcaagttggtccctatatttcaccacttactatctatta 28596846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 9095241 - 9095169
Alignment:
Q  6 taaatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaa 78  Q
    |||||||||||||| |||| ||||||||| |||| ||||||||| |   ||||||||||||| ||||||||||    
T  9095241 taaatatttcaaaaaggtcactgactctattaaattgtcaagtttgttactatatttaaccatttactatcaa 9095169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 14748159 - 14748216
Alignment:
Q  28 gactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtc 85  Q
    ||||||| |||| ||||||||||| || |||||||||||||||| | |||||||||||    
T  14748159 gactctattaaaatgtcaagttggtccatatatttaaccacttattttcaattaagtc 14748216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31175467 - 31175547
Alignment:
Q  1 gattgtaaatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    |||| |||||||| ||||| |||  ||||||||| |||| |||||||||   ||||||||||||||| |||| ||||||||    
T  31175467 gattataaatattacaaaaaggtacctgactctactaaattgtcaagtttatccctatatttaaccatttaccatcaatta 31175547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 43501975 - 43502026
Alignment:
Q  249 tagagaggagcacactcctaggtctcaagccttcacctccaggcgaacccct 300  Q
    |||||||||||||||||||||||  |||||||||||| | |||| |||||||    
T  43501975 tagagaggagcacactcctaggttccaagccttcaccactaggccaacccct 43502026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 43303824 - 43303767
Alignment:
Q  241 ctgagaactagagaggagcacactcctaggtctcaagccttcacctccaggcgaaccc 298  Q
    |||||| || ||||||||||| |||| |||||||||||| ||||| |||||| |||||    
T  43303824 ctgagacctggagaggagcacgctccaaggtctcaagccatcaccaccaggccaaccc 43303767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 34844443 - 34844399
Alignment:
Q  235 tcgaagctgagaactagagaggagcacactcctaggtctcaagcc 279  Q
    ||||| |||||| || |||||||||||||||| ||||||||||||    
T  34844443 tcgaacctgagaccttgagaggagcacactccaaggtctcaagcc 34844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 26392975 - 26393036
Alignment:
Q  28 gactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtccttt 89  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||  |||||||    
T  26392975 gactctattaaactgtcaagttggtccctatatttaaccatttactatcaatttggtccttt 26393036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 6556523 - 6556586
Alignment:
Q  10 tatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttact 73  Q
    |||||||||| | || |||||||||| ||| ||||||||||| ||||||| |||||||||||||    
T  6556523 tatttcaaaaagatcactgactctaagaaaatgtcaagttggtccctatacttaaccacttact 6556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 4948956 - 4949034
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcc 86  Q
    |||||||||||| |||| |||| |||| |||||||||||  | | || ||||||||| |||||||||||||||| ||||    
T  4948956 aatatttcaaaacggtccctgagtctattaaactgtcaaagttgtccatatatttaatcacttactatcaattaggtcc 4949034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 24446952 - 24446879
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    |||||||||| | ||||  |||||||| |||| |||| | |||  ||||||||||||||||| |||||||||||    
T  24446952 aatatttcaagaaggtccttgactctattaaattgtcgaattgatccctatatttaaccactcactatcaatta 24446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 3332674 - 3332614
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    ||||||| |||| |||||| ||||| | |||| ||||||||||  ||||||||||||||||    
T  3332674 aatattttaaaaaggtctccgactccattaaattgtcaagttgatccctatatttaaccac 3332614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1527 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 271 - 199
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  271 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23161474 - 23161546
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23161474 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23161546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23162125 - 23162197
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23162125 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23162197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23162776 - 23162848
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23162776 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23162848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23163427 - 23163499
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23163427 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23163499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23164078 - 23164150
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23164078 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23164150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23164729 - 23164801
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23164729 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23164801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23165380 - 23165452
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23165380 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23165452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23166031 - 23166103
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23166031 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccacctactatcaattaggtcctt 23166103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 32659722 - 32659788
Alignment:
Q  15 caaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    ||||| ||||||| |||||| |||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  32659722 caaaaaggtctcttactctattaaactgtcaagatggtccctatatttaactacttactataaatta 32659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 38463948 - 38463891
Alignment:
Q  241 ctgagaactagagaggagcacactcctaggtctcaagccttcacctccaggcgaaccc 298  Q
    |||||| ||||||||||||||||||||||||| ||||||||| || |||||| |||||    
T  38463948 ctgagacctagagaggagcacactcctaggtcccaagccttcgccaccaggccaaccc 38463891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 42678144 - 42678094
Alignment:
Q  235 tcgaagctgagaactagagaggagcacactcctaggtctcaagccttcacc 285  Q
    ||||| |||||| |||||| ||||||||||||||||||||||| |||||||    
T  42678144 tcgaacctgagacctagagtggagcacactcctaggtctcaagtcttcacc 42678094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 6021173 - 6021221
Alignment:
Q  249 tagagaggagcacactcctaggtctcaagccttcacctccaggcgaacc 297  Q
    |||||||||||||||| |||||||| ||||||||||||| |||| ||||    
T  6021173 tagagaggagcacacttctaggtcttaagccttcacctctaggccaacc 6021221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 20870741 - 20870793
Alignment:
Q  246 aactagagaggagcacactcctaggtctcaagccttcacctccaggcgaaccc 298  Q
    |||||| |||||||||| |||||||||||||||||||||  |||||| |||||    
T  20870741 aactagtgaggagcacaatcctaggtctcaagccttcactaccaggccaaccc 20870793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23162006 - 23162058
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23162006 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23162657 - 23162709
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23162657 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23162709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23163308 - 23163360
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23163308 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23163959 - 23164011
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23163959 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23164011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23164610 - 23164662
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23164610 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23164662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23165261 - 23165313
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23165261 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23165313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23165912 - 23165964
Alignment:
Q  16 aaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccac 68  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  23165912 aaaaaggtctttgactctattaaaccgtcaagttggtccctatatttagccac 23165964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 35103772 - 35103696
Alignment:
Q  141 caatcccaccgtccactagcagggtcacacttgaagtcagagcaaaactttgtatggactgacctaacacaaaaatt 217  Q
    ||||||||||||||||||| ||||   || |||||| |||||||||  ||||||||||||||||||| |||||||||    
T  35103772 caatcccaccgtccactagtagggggccaattgaaggcagagcaaagatttgtatggactgacctaatacaaaaatt 35103696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 23058309 - 23058386
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtc 85  Q
    |||||||| ||| |||| || | |||| ||| |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  23058309 aatatttctaaaaggtccctcattctattaatctgttaagttggtccctatatttaaccacttactatcaatttagtc 23058386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 30943012 - 30943083
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaat 79  Q
    ||||||||| || | || ||||||||| |||| |||||| |||| ||||||||||||  |||||||||||||    
T  30943012 aatatttcataaagctccctgactctattaaattgtcaaattggtccctatatttaattacttactatcaat 30943083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 9394828 - 9394787
Alignment:
Q  8 aatatttcaaaatggtctctgactctaataaactgtcaagtt 49  Q
    |||||||||||| |||||||||||||| ||| ||||||||||    
T  9394828 aatatttcaaaaaggtctctgactctattaagctgtcaagtt 9394787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 10408633 - 10408678
Alignment:
Q  36 taaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    ||||| |||||||||| | ||||| |||||||||||||||||||||    
T  10408633 taaacggtcaagttggtctctatacttaaccacttactatcaatta 10408678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 34761217 - 34761188
Alignment:
Q  54 cctatatttaaccacttactatcaattaag 83  Q
    ||||||||||||||||||||||||||||||    
T  34761217 cctatatttaaccacttactatcaattaag 34761188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 26482165 - 26482121
Alignment:
Q  235 tcgaagctgagaactagagaggagcacactcctaggtctcaagcc 279  Q
    ||||| |||||| || |||||||||||||||||||||| ||||||    
T  26482165 tcgaacctgagaccttgagaggagcacactcctaggtcccaagcc 26482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8109476 - 8109396
Alignment:
Q  1 gattgtaaatatttcaaaatggtctctgactctaataaactgtcaagttggcccctat-atttaaccacttactatcaatt 80  Q
    ||||||||||||||| ||| ||||||||| |||  |||| ||||||||||| || |||  |||||||||||||||||||||    
T  8109476 gattgtaaatatttcgaaaaggtctctgagtcttttaaattgtcaagttggtccttatgttttaaccacttactatcaatt 8109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 2046865 - 2046787
Alignment:
Q  10 tatttcaaaatggtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    ||||| |||| ||||| |||||||||||||||||||||||||   ||||||||||||| ||| || |||| || |||||    
T  2046865 tattttaaaacggtctttgactctaataaactgtcaagttggttgctatatttaaccatttaataccaatcaaatcctt 2046787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 19050572 - 19050520
Alignment:
Q  27 tgactctaataaactgtcaagttggcccctatatttaaccacttactatcaat 79  Q
    |||||||| |||| ||||||||| | || ||||||||||||||||||||||||    
T  19050572 tgactctattaaattgtcaagttcgtccttatatttaaccacttactatcaat 19050520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 22994082 - 22994141
Alignment:
Q  22 gtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    ||||| ||||||| |||||||||||||||  || |||||||||| | |||||||||||||    
T  22994082 gtctccgactctattaaactgtcaagttgatccttatatttaactatttactatcaatta 22994141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 23794316 - 23794257
Alignment:
Q  22 gtctctgactctaataaactgtcaagttggcccctatatttaaccacttactatcaatta 81  Q
    ||||| ||||||| |||||||||||||||  || |||||||||| | |||||||||||||    
T  23794316 gtctccgactctattaaactgtcaagttgatccttatatttaactatttactatcaatta 23794257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 32609225 - 32609171
Alignment:
Q  36 taaactgtcaagtt--ggcccctatatttaaccacttactatcaattaagtcctt 88  Q
    ||||||||||||||  || ||||||| ||||||||||||||||||||| ||||||    
T  32609225 taaactgtcaagttttggtccctataattaaccacttactatcaattaggtcctt 32609171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 27834806 - 27834761
Alignment:
Q  35 ataaactgtcaagttggcccctatatttaaccacttactatcaatt 80  Q
    ||||||| |||||||||  ||||||||||||||||||| |||||||    
T  27834806 ataaactatcaagttggtacctatatttaaccacttaccatcaatt 27834761  T

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