View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7239_high_4 (Length: 434)
Name: NF7239_high_4
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 187 - 431
Target Start/End: Original strand, 34144914 - 34145158
Alignment:
| Q |
187 |
ccatctggaatcctgtcaacccatcatcaccatctgggccactaagaagcttttgttttagaacttctaggttgtgaagctgctgagctgttaactcagc |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34144914 |
ccatctggaatcctgccaacccatcatcaccatcggggccactaagaagcttttgttttagaacttctaggttgtgaagctgctgagccgttaactcagc |
34145013 |
T |
|
| Q |
287 |
agccggcagctgattaaaacccaatcgtcctccaccgactgtcatagtcggtggagaagcatttggcttaaagccgaaacaatcaggaaaggcgagaaca |
386 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145014 |
agctggcagctgattaaaacccaattgtcctccaccaactgtcatagtcaatggagaagcatttggcttaaagccgaaacaatcaggaaaggcgagaaca |
34145113 |
T |
|
| Q |
387 |
gattcaacgacctgaggaccgaggtatttggccagttcgttcttc |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145114 |
gattcaacgacctgaggaccgaggtatttggccagttcgttcttc |
34145158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 169 - 431
Target Start/End: Original strand, 34155236 - 34155498
Alignment:
| Q |
169 |
caacaggaacattaacatccatctggaatcctgtcaacccatcatcaccatctgggccactaagaagcttttgttttagaacttctaggttgtgaagctg |
268 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||| ||| |
|
|
| T |
34155236 |
caacaggaacattaacatccatatggaatcctgccaacccatcatcaccatcggggccactaagaagattttgttttaacacttctaagttgtgaatctg |
34155335 |
T |
|
| Q |
269 |
ctgagctgttaactcagcagccggcagctgattaaaacccaatcgtcctccaccgactgtcatagtcggtggagaagcatttggcttaaagccgaaacaa |
368 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||| ||||| ||||| |||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
34155336 |
ctgagtcgtcaactcagcagctggcagctgattaaaagccaattgtcctgcaccgattgtcatagtcggtgcagatgcatttggcttaaagccgaaacaa |
34155435 |
T |
|
| Q |
369 |
tcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttc |
431 |
Q |
| |
|
||||||||| |||||||| ||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
34155436 |
tcaggaaagccgagaacaaattcaacaatctgaggattgaggtatttggccagttcgttcttc |
34155498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 34144811 - 34144930
Alignment:
| Q |
15 |
tcaaaagtatcagccctagaaggagcatcaacaacaggaggaacatgaggaagcatctgggatcctgccaacccagaatcacgaacaggaacatcaacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144811 |
tcaaaagtatcagccctagaaggagcatcaac---aggaggaacatgaggaagcatctgggatcctgccaacccagaatcacgaacaggaacatcaacat |
34144907 |
T |
|
| Q |
115 |
cagcacccatctggaatcttgcc |
137 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
34144908 |
cagcacccatctggaatcctgcc |
34144930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 34155086 - 34155206
Alignment:
| Q |
49 |
caggaggaacatgaggaagcatctgggatcctgccaacccagaatcacgaacaggaacatcaacatcagcacccatctggaatcttgccgagccaccact |
148 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||| || |
|
|
| T |
34155086 |
caggaggaacatcaggaagcatatgggatcctgccaacccagaatcacgaacaag------aatatcagcacccatctggaatcttgtcgagccaccgct |
34155179 |
T |
|
| Q |
149 |
gccaccgaccgaagcaccaccaacagg |
175 |
Q |
| |
|
||| ||| ||| ||||||||||||| |
|
|
| T |
34155180 |
accattgacagaaccaccaccaacagg |
34155206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University