View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7239_low_10 (Length: 388)
Name: NF7239_low_10
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 43904161 - 43903795
Alignment:
| Q |
16 |
acatcaccgtctcaacaagtctatgccgtgtgagacccacaccttcttttttctacacgaaaatacggaacaatacttgccaacttatatt--------- |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43904161 |
acatcaccgtctcaacaagtctatgccgtgtgagacccacaccttcttttttctacacgaaaatacggaacaatacttgccaacttatattacagtatat |
43904062 |
T |
|
| Q |
107 |
-ctccgtcaccttttccatgataccatgcaggcacaaaaacacac--gtcatcttctcatttagttcttccaattttcaaaattcaattctaactttatc |
203 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43904061 |
tctgcgtcaccttttccatgataccatgcaggcacaaaaacacacacgtcatcttctcatttagttcttccaatttccaaaattcaattctaactttatc |
43903962 |
T |
|
| Q |
204 |
aacaaacatagccacaaaataaaacctaaccaaaaaagatatcccaaatctaaaactaaccccacaacacatacaacaattctataattcaatctctata |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43903961 |
aacaaacatagccacaaaataaaacctaactaaaaaagatatcccaaatctaaa-ctaaccccacaacacatacaacaattctataattcaatctctata |
43903863 |
T |
|
| Q |
304 |
aacaaattaaaagagaaattttacacagaatgtgcatatcgatatcatggtagatttgacgaaatagt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43903862 |
aacaaattaaaagagaaattttacacagaatgtacatatcgatatcatggtagatttgacgaaatagt |
43903795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University