View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_low_12 (Length: 383)

Name: NF7239_low_12
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_low_12
NF7239_low_12
[»] chr5 (6 HSPs)
chr5 (93-383)||(37704626-37704916)
chr5 (191-379)||(37699152-37699349)
chr5 (251-379)||(37437696-37437823)
chr5 (307-365)||(37698806-37698864)
chr5 (96-132)||(1630012-1630048)
chr5 (93-133)||(30384256-30384296)
[»] chr4 (2 HSPs)
chr4 (191-379)||(16840857-16841060)
chr4 (93-131)||(31095092-31095130)
[»] chr7 (2 HSPs)
chr7 (16-92)||(267362-267438)
chr7 (94-132)||(12422352-12422390)
[»] chr6 (2 HSPs)
chr6 (93-131)||(17411089-17411127)
chr6 (102-132)||(196257-196287)
[»] chr8 (1 HSPs)
chr8 (93-131)||(18080600-18080638)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 93 - 383
Target Start/End: Complemental strand, 37704916 - 37704626
Alignment:
Q  93 acttgttataattaaataacttaaatgacgtaagtgatacgnnnnnnnnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgc 192  Q
    |||||||||||||||||||||||||||||| ||||||||||                ||||||||||||||||||||||||||||||| |||||||||||    
T  37704916 acttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgc 37704817  T
Q  193 tctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704816 tctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactca 37704717  T
Q  293 ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704716 ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtc 37704626  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 191 - 379
Target Start/End: Complemental strand, 37699349 - 37699152
Alignment:
Q  191 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 284  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  285 attactcactgtgattgctacttaaatgaatttgttatc---ttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct 379  Q
    |||||||| | ||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  37699249 attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtct 37699152  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 37437823 - 37437696
Alignment:
Q  251 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatc---ttatcacaacttgaaataagattc 347  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||   ||||||||||||| ||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc 37437724  T
Q  348 caactttcgtgctaattacgttcaaaaagtct 379  Q
    |||||    |||||||||||||| ||||||||    
T  37437723 caact----tgctaattacgttcgaaaagtct 37437696  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 37698864 - 37698806
Alignment:
Q  307 taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaatta 365  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37698864 taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaatta 37698806  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  96 tgttataattaaataacttaaatgacgtaagtgatac 132  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 30384296 - 30384256
Alignment:
Q  93 acttgttataattaaataacttaaatgacgtaagtgatacg 133  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  30384296 acttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 379
Target Start/End: Original strand, 16840857 - 16841060
Alignment:
Q  191 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 280  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  281 gcacattactcactgtgattgctacttaaatgaatttgttatct------tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaa 374  Q
    ||| |||| ||| |||||||| ||||||||||||||||||||||      |||||||||||| |||||||||||||| || |||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaac-ttagtgctaattacgttcaaaa 16841055  T
Q  375 agtct 379  Q
    |||||    
T  16841056 agtct 16841060  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 31095130 - 31095092
Alignment:
Q  93 acttgttataattaaataacttaaatgacgtaagtgata 131  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31095130 acttgttataattaaataacttaaaggacgtaagtgata 31095092  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 267438 - 267362
Alignment:
Q  16 gacatcatatgatatgatagagagataattatagcacaccacgaagtgaacaacctggcttggacaaattgcgcttt 92  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  267438 gacatgatatgatatgatagagagataattatagcacaccaagaagtgaacaacctggcttggacaaattgcgcttt 267362  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  94 cttgttataattaaataacttaaatgacgtaagtgatac 132  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 17411127 - 17411089
Alignment:
Q  93 acttgttataattaaataacttaaatgacgtaagtgata 131  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  17411127 acttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 196257 - 196287
Alignment:
Q  102 aattaaataacttaaatgacgtaagtgatac 132  Q
    |||||||||||||||||||||||||||||||    
T  196257 aattaaataacttaaatgacgtaagtgatac 196287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 18080638 - 18080600
Alignment:
Q  93 acttgttataattaaataacttaaatgacgtaagtgata 131  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  18080638 acttattacaattaaataacttaaatgacgtaagtgata 18080600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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