View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_low_15 (Length: 309)

Name: NF7239_low_15
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_low_15
NF7239_low_15
[»] chr1 (10 HSPs)
chr1 (10-297)||(9475290-9475577)
chr1 (17-208)||(9306840-9307031)
chr1 (10-181)||(8924722-8924893)
chr1 (14-170)||(8959895-8960051)
chr1 (13-203)||(9359214-9359404)
chr1 (14-170)||(8936374-8936530)
chr1 (10-209)||(8945829-8946028)
chr1 (13-199)||(9245056-9245242)
chr1 (10-200)||(9335479-9335669)
chr1 (83-158)||(9093373-9093448)
[»] chr3 (1 HSPs)
chr3 (13-211)||(9168363-9168558)
[»] chr6 (1 HSPs)
chr6 (11-208)||(15912782-15912979)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 9475290 - 9475577
Alignment:
Q  10 aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9475290 aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaatcaactacgat 9475389  T
Q  110 aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9475390 aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattaca 9475489  T
Q  210 gtaatagcagccgcgaggatccatacagatttgattatgcatcttggttcgaatacataatttacttgaactgtagcaagccagtgaa 297  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9475490 gtaatagcaaacgcgaggatccatacggatttgattatgcatcttggttcgaatacataacttacttgaactgtagcaagccagtgaa 9475577  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 9306840 - 9307031
Alignment:
Q  17 ggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataactaca 116  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| | ||| ||| ||||||| ||||||||||||   ||||||     
T  9306840 ggtgatccgaggtatgagttatcctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaatcaactacagaaactact 9306939  T
Q  117 caatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattac 208  Q
    |||| ||| ||||||||| |||||||||||| | |||||||| |||||| ||||| ||||||||||||  | ||||||||||||||| ||||    
T  9306940 caatgagagtagttgatcttggaattcaagaaggtgattgctcctccatgcctcgctatttcttaaccgcagccaatttcacaagttcttac 9307031  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 8924893 - 8924722
Alignment:
Q  10 aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgat 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |  | |||  ||| ||| ||||||| |||||||||||| ||    
T  8924893 aacctgtggtgatccgaggtacgagttatcctgcgaaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaatcaactacaat 8924794  T
Q  110 aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttctta 181  Q
    ||||||||||||||| |||||||||| |||||| |||||| |||||||| |||| ||||||| |||| ||||    
T  8924793 aactacacaatcagaatagttgatcccggaattgaagagggtgattgctcctcctttcctcgctattactta 8924722  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 8960051 - 8959895
Alignment:
Q  14 tgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataact 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||| ||| ||| ||||||| |||||||||||| ||||||    
T  8960051 tgtggtgatccgaggtacgagttatcctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataact 8959952  T
Q  114 acacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctc 170  Q
    |||||||  |  |||||||||| |||||| |||||| |||||||| | |||||||||    
T  8959951 acacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctc 8959895  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 9359404 - 9359214
Alignment:
Q  13 ctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataac 112  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||   ||||||| || |||| | ||| ||| ||||| ||  |||||||||||  ||     
T  9359404 ctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcaccgtgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacgtaaat 9359305  T
Q  113 tacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagtt 203  Q
    ||||||||  | ||||||||||| | |||| |||||| | |||||| |||||||||||  ||||||||||| |||||||||||||||||||    
T  9359304 tacacaattcggctagttgatccagtaattgaagagggtaattgctcctccattcctccatatttcttaactaaatccaatttcacaagtt 9359214  T

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Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 8936530 - 8936374
Alignment:
Q  14 tgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataact 113  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||| || | |||| ||| ||| ||||||| |||||||||||| ||||||    
T  8936530 tgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaatcaactacaataact 8936431  T
Q  114 acacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctc 170  Q
    |||||||  |  |||||||||| |||||| |||||| |||||||| | |||||||||    
T  8936430 acacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctc 8936374  T

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Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 8946028 - 8945829
Alignment:
Q  10 aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgat 109  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| |||||   ||||||| | ||| ||| |||| || |||||||||||| ||    
T  8946028 aacctgcggtgatccgaggtacgagttatcctgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaaatcaatcaactacaat 8945929  T
Q  110 aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattaca 209  Q
    |||||||||||  |  ||||||||||||||||  |||| | ||||||||  || ||||| ||  ||||| |||||  ||| ||||||||||||| |||||    
T  8945928 aactacacaattcggttagttgatcctggaataaaagaaggtgattgctcttcaattccccggaatttcctaacctcatcaaatttcacaagttcttaca 8945829  T

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Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 9245056 - 9245242
Alignment:
Q  13 ctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataac 112  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||  ||||||| || |||||| ||| ||| |||||||| ||||||||||| | |||    
T  9245056 ctgtggtgatccgaagtatgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgtgaaggcaatcaactacaacaac 9245155  T
Q  113 tacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcaca 199  Q
    ||||||||     |||||||||| |||||| |||||| |  ||||| |||| ||||||| ||||| ||| ||  ||||||| |||||    
T  9245156 tacacaattttgttagttgatcccggaattgaagagggtagttgctcctcccttcctcgctattttttatcctcatccaatctcaca 9245242  T

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Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 9335669 - 9335479
Alignment:
Q  10 aacctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgat 109  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| || |||| | ||| ||| ||||| ||  ||||||||||       
T  9335669 aacctgtggtgatccaaagtacgagttatcctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacata 9335570  T
Q  110 aactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaa 200  Q
    |||||||||||  |  |||||||||| |||||| |||| | ||||| || |||||||||||| ||||  |||||||  |||||| ||||||    
T  9335569 aactacacaattcggttagttgatccaggaattgaagaaggtgattactcctccattcctcgctattctttaaccagttccaatctcacaa 9335479  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 9093373 - 9093448
Alignment:
Q  83 tacaatgtgaagtcaatcaactacgataactacacaatcagactagttgatcctggaattcaagaggatgattgct 158  Q
    |||||||||||||| ||||||||| | || | ||||||||| ||||| ||||||||||||||| | ||| ||||||    
T  9093373 tacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaagataattgct 9093448  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 9168558 - 9168363
Alignment:
Q  13 ctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgataac 112  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| ||| | || ||| || ||| ||| ||||||| |||||||||||| | |||    
T  9168558 ctgtggtgatccgaggtacgagttatcctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaac 9168459  T
Q  113 tacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattacagt 211  Q
    |||||||||||| ||||||||||||||||  |||| | ||||||   | |||||||||| ||||||||||||  | |||||||||||||||||||||||    
T  9168458 tacacaatcagagtagttgatcctggaatagaagaaggtgattg---caccattcctcgctatttcttaaccgcaaccaatttcacaagttattacagt 9168363  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 15912782 - 15912979
Alignment:
Q  11 acctgtggtgatccgaggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcggttaactacaatgtgaagtcaatcaactacgata 110  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||| |||| | || |||| | ||| ||| |||||  |  |||||||||  | |    
T  15912782 acctgtggggatccgagctacgagttatcctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgtgttggaaatcaactataaaa 15912881  T
Q  111 actacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattac 208  Q
    |||||||||| ||  |||||||| | ||  | ||||||| |||||||| ||||||||||||||| |||||||||| |||||| ||| |||||| ||||    
T  15912882 actacacaattaggttagttgatgccgggttgcaagagggtgattgctcctccattcctcgttacttcttaaccacatccaacttctcaagtttttac 15912979  T

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