View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_17 (Length: 270)
Name: NF7239_low_17
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3016890 - 3016638
Alignment:
| Q |
1 |
atagaatagaattcaattaatgtacnnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactc |
100 |
Q |
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| T |
3016890 |
atagaatagaattcaattaatgtacaaaaaaaattatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaactc |
3016791 |
T |
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| Q |
101 |
actcaagcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016790 |
actcaagcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttga |
3016691 |
T |
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| Q |
201 |
atggacttagaaggtgattgttcaacctttgataagctctttccaacttgctg |
253 |
Q |
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| T |
3016690 |
atggacttagaaggtgattgttcaacctttgataagctctttccaacttgctg |
3016638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 3032587 - 3032397
Alignment:
| Q |
44 |
caccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggcaagggcaactttgacaccaacatctgaa |
143 |
Q |
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|||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| |||||||||||||| || ||||||||| || |||||||| |
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| T |
3032587 |
caccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactgaagcaggaggcaagagccactttgacatcagcatctgaa |
3032488 |
T |
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| Q |
144 |
tgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttagaaggtgattgttcaacctttgata |
234 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||| | || || | || |||||||||||||||| |||||| |
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| T |
3032487 |
tgctttataagtttatcagcaattaatgctttcaatgatggagacagtgcatttagcatagattcaggaggtgattgttcaacccttgata |
3032397 |
T |
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