View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_low_21 (Length: 246)

Name: NF7239_low_21
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_low_21
NF7239_low_21
[»] chr7 (7 HSPs)
chr7 (1-236)||(478003-478238)
chr7 (147-211)||(28195164-28195228)
chr7 (78-164)||(21979060-21979146)
chr7 (78-208)||(33164410-33164546)
chr7 (202-236)||(478242-478276)
chr7 (202-236)||(478280-478314)
chr7 (96-174)||(34673618-34673696)
[»] chr8 (2 HSPs)
chr8 (51-194)||(37436619-37436763)
chr8 (1-42)||(37436564-37436605)
[»] chr5 (2 HSPs)
chr5 (81-210)||(408067-408196)
chr5 (108-194)||(41485205-41485291)
[»] chr2 (5 HSPs)
chr2 (69-168)||(45224838-45224940)
chr2 (64-194)||(13693837-13693967)
chr2 (133-211)||(41454375-41454453)
chr2 (80-136)||(22650312-22650368)
chr2 (91-210)||(19296106-19296225)
[»] scaffold0025 (1 HSPs)
scaffold0025 (64-194)||(36746-36880)
[»] chr3 (2 HSPs)
chr3 (64-128)||(28144874-28144938)
chr3 (64-146)||(28080376-28080454)
[»] chr1 (3 HSPs)
chr1 (66-158)||(35812255-35812347)
chr1 (69-130)||(20990423-20990484)
chr1 (162-210)||(12429125-12429173)
[»] chr4 (2 HSPs)
chr4 (71-194)||(16422494-16422617)
chr4 (87-169)||(44203784-44203866)
[»] chr6 (1 HSPs)
chr6 (64-158)||(22717522-22717616)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 478003 - 478238
Alignment:
Q  1 ataagagtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnnctcatatgcatgcataacactatattatcatattaatatacaagagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |       |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  478003 ataagagtttaaaaatttgaaaattagtgttggttacaacagcaaaaaaactcatatgcacgcataacactatattatcatattaatatacaagagaaag 478102  T
Q  101 tcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  478103 tcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctca 478202  T
Q  201 tgcttcagagctccaaatctatcataatgatgtcca 236  Q
     |||||||||||||||||||||||||||||||||||    
T  478203 ggcttcagagctccaaatctatcataatgatgtcca 478238  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 28195228 - 28195164
Alignment:
Q  147 acgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctcatgcttcagagc 211  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||  | |||||||||||||    
T  28195228 acgagtaccgtatgcgtacccggtacgagtacttcacctttttacaagtacccatgcttcagagc 28195164  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 21979060 - 21979146
Alignment:
Q  78 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgta 164  Q
    ||||||||||| | ||||||||| |||| ||| || ||||| ||||||||||||||||| ||  ||||||  |||||||||||||||    
T  21979060 tcatattaatacataagagaaagccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccgtatgtgta 21979146  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 33164410 - 33164546
Alignment:
Q  78 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgt------gtacccggta 171  Q
    ||||||| || || ||||||||| || || ||||| ||||| || |||| ||||||||| ||  ||||||||||||||||| ||      ||||||||||    
T  33164410 tcatattgatgtataagagaaagccaaaaatttcactcacattacaatattgagcaaaaatggagtaccacgagtaccgtacgtccgtacgtacccggta 33164509  T
Q  172 cgggtacttcacctttttacaagcgctcatgcttcag 208  Q
    |||| ||||||||  ||||||||  ||||||||||||    
T  33164510 cgggcacttcaccactttacaagtactcatgcttcag 33164546  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 478242 - 478276
Alignment:
Q  202 gcttcagagctccaaatctatcataatgatgtcca 236  Q
    |||||||||||||||||||||||||||||||||||    
T  478242 gcttcagagctccaaatctatcataatgatgtcca 478276  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 478280 - 478314
Alignment:
Q  202 gcttcagagctccaaatctatcataatgatgtcca 236  Q
    |||||||||||||||||||||||||||||||||||    
T  478280 gcttcagagctccaaatctatcataatgatgtcca 478314  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 34673618 - 34673696
Alignment:
Q  96 gaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgg 174  Q
    |||||||||| |||||| ||||| |||||||||||| || | ||  ||| ||||||||||||| |||||  ||||||||    
T  34673618 gaaagtcacatttttcactcacaatagaataatgagaaataatggagtagcacgagtaccgtacgtgtattcggtacgg 34673696  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 37436619 - 37436763
Alignment:
Q  51 ctcatatgcatgcataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagc-aaaattgatgtaccacg 149  Q
    ||||||||||   |||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| |||| ||| |||||| |    
T  37436619 ctcatatgcacatataacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccatg 37436718  T
Q  150 agtaccgtatgtgtacccggtacgggtacttcacctttttacaag 194  Q
    |||||  ||| ||| | ||||| ||||||||||||||||||||||    
T  37436719 agtacaatatatgttctcggtatgggtacttcacctttttacaag 37436763  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37436564 - 37436605
Alignment:
Q  1 ataagagtttaaaaatttgaaaattagtgttggttacaacaa 42  Q
    |||| |||||| ||| ||||||||||||||||||||||||||    
T  37436564 ataaaagtttagaaagttgaaaattagtgttggttacaacaa 37436605  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 408196 - 408067
Alignment:
Q  81 tattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtactt 180  Q
    ||||||| || ||||||||| ||||| ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| | |||||| |||| |||||||    
T  408196 tattaatgtataagagaaagccacaaatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgcgtacccagtaccggtactt 408097  T
Q  181 cacctttttacaagcgctcatgcttcagag 210  Q
    |||| |||||||||  | ||||||||||||    
T  408096 caccgttttacaagtacccatgcttcagag 408067  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 41485205 - 41485291
Alignment:
Q  108 tttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 194  Q
    ||||||||| |||| ||||||||| |||||||| || |||| | ||||||| | ||||||||||||||||||||| | |||||||||    
T  41485205 tttcattcagagtacaataatgaggaaaattgaagtgccaccaataccgtacgcgtacccggtacgggtacttcatcattttacaag 41485291  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 45224940 - 45224838
Alignment:
Q  69 actatattatcatatta---atatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtac 165  Q
    |||||||||||||||||   ||||| ||||||||| ||||| ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| ||||||    
T  45224940 actatattatcatattattaatatataagagaaagccacaaatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgtgtac 45224841  T
Q  166 ccg 168  Q
    |||    
T  45224840 ccg 45224838  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 13693837 - 13693967
Alignment:
Q  64 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgt 163  Q
    |||||| |||||| || ||||||| || | ||||||| || || ||||| ||||| ||  ||||||| ||||| |   ||| || |||||||||||  ||    
T  13693837 ataacattatattgtcctattaatgtataggagaaagccataaatttcactcacaataatataatgaacaaaaatagagtatcaagagtaccgtatccgt 13693936  T
Q  164 acccggtacgggtacttcacctttttacaag 194  Q
    ||||| ||||||||||||||| |||||||||    
T  13693937 acccgatacgggtacttcaccgttttacaag 13693967  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 41454453 - 41454375
Alignment:
Q  133 aaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctcatgcttcagagc 211  Q
    |||| ||| ||||||||||||||||| | ||||||| ||||||||||||| | |||||||||  | ||||||| |||||    
T  41454453 aaaaatgaagtaccacgagtaccgtacgcgtacccgatacgggtacttcatcgttttacaagtacccatgctttagagc 41454375  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 22650312 - 22650368
Alignment:
Q  80 atattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaa 136  Q
    ||||||||||| || ||||| |||||||||||| ||| | |||||||||||||||||    
T  22650312 atattaatatataaaagaaaatcacaattttcactcataatagaataatgagcaaaa 22650368  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 19296106 - 19296225
Alignment:
Q  91 caagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcaccttttta 190  Q
    |||||||||| |||| ||| || ||||| ||| | ||||||||||| | | |||||| |||||  |||| |||| |  ||||||||||||| || |||||    
T  19296106 caagagaaagccacattttccactcacaatagcacaatgagcaaaaataaagtaccatgagtattgtatatgtatcttgtacgggtacttcgccatttta 19296205  T
Q  191 caagcgctcatgcttcagag 210  Q
    | ||  ||||||||||||||    
T  19296206 cgagtactcatgcttcagag 19296225  T

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Target: scaffold0025 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 36880 - 36746
Alignment:
Q  64 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta----t 159  Q
    |||||| ||||||||||||||||| || | ||||||| ||||| || || ||||| || |||| ||||||||| ||  |||||||||||||| ||    |    
T  36880 ataacattatattatcatattaatgtataggagaaagccacaaattccactcacaatacaatattgagcaaaactggagtaccacgagtaccatacgggt 36781  T
Q  160 gtgtacccggtacgggtacttcacctttttacaag 194  Q
    | ||||||||||| ||||||||||| |||||||||    
T  36780 gagtacccggtacaggtacttcaccgttttacaag 36746  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 28144938 - 28144874
Alignment:
Q  64 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataat 128  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  28144938 ataatactatattatcatattaataaataagagaaagtcacaattttcaatcacaatagaataat 28144874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 28080454 - 28080376
Alignment:
Q  64 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtacc 146  Q
    |||| |||||||||||||||    ||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||| |||||    
T  28080454 ataaaactatattatcatat----atataagagaaagtcacaattttcactcacaatagaataatgaacaaaaatgaagtacc 28080376  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 35812255 - 35812347
Alignment:
Q  66 aacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 158  Q
    ||||||||||| |||||||||| || |||||| || ||||||||| | ||||| ||||||||||||||||| ||  ||| |||||||||||||    
T  35812255 aacactatattgtcatattaatctataagagagagccacaatttttactcacaatagaataatgagcaaaaatggagtatcacgagtaccgta 35812347  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 20990423 - 20990484
Alignment:
Q  69 actatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatga 130  Q
    |||||||||||||||||||||| || |||||| |||||||||||  |||| ||||| |||||    
T  20990423 actatattatcatattaatatataaaagaaagccacaattttcacccacaatagaaaaatga 20990484  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 12429173 - 12429125
Alignment:
Q  162 gtacccggtacgggtacttcacctttttacaagcgctcatgcttcagag 210  Q
    |||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  12429173 gtacccggtacgggtacttcacatttttacgagtactcatgcttcagag 12429125  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 16422494 - 16422617
Alignment:
Q  71 tatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggt 170  Q
    |||||| |||||||| | || ||||||| |||| || ||||| ||||| || ||||||||| |||| ||| ||||||||||||| ||| | ||| ||| |    
T  16422494 tatattgtcatattagtgtataagagaatgtcataaatttcactcacaatacaataatgagaaaaaatgaagtaccacgagtactgtacgcgtatccgat 16422593  T
Q  171 acgggtacttcacctttttacaag 194  Q
    |||||||||||| | |||||||||    
T  16422594 acgggtacttcatcgttttacaag 16422617  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 44203784 - 44203866
Alignment:
Q  87 tatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccgg 169  Q
    |||||||||| ||| ||||| ||||| |||||||| |||||||||||||| ||  ||| ||||||||||||| | ||||||||    
T  44203784 tatacaagagtaagccacaaatttcactcacagtacaataatgagcaaaaatggagtagcacgagtaccgtacgcgtacccgg 44203866  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 22717522 - 22717616
Alignment:
Q  64 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 158  Q
    |||| ||||| | |||| || |||||| |||||||| ||||||||||||| |||| ||||||| |||| |||| |   ||| |||||||||||||    
T  22717522 ataatactatgtcatcaaatcaatatataagagaaaatcacaattttcatccacaatagaatactgaggaaaaatagggtatcacgagtaccgta 22717616  T

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