View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_22 (Length: 243)
Name: NF7239_low_22
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1527750 - 1527992
Alignment:
| Q |
1 |
ccaagccactccaccgaacatcccatactactcaatgtggattagggcaccccatattaccaaagtccctatcacatagatgctctaatacaatgtcatg |
100 |
Q |
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| T |
1527750 |
ccaagccactccaccgaacatcccatactactcaatgtggattagggcaccccatattaccaaagtccctatcacatagatgctctaatacaatgtcatg |
1527849 |
T |
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| Q |
101 |
aagcaactatttcaaaaatttaacatgtttagtaacacgattaattttgtctttctttattaattattaacctttgtcaattccaaggtctgtaggtttt |
200 |
Q |
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| T |
1527850 |
aagcaactatttcaaaaatttaacatgtttagtaacacgattaattttgtctttctttattaattattaacctttgtcaattccaaggtctgtagttttt |
1527949 |
T |
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| Q |
201 |
cttggttttatctcctaatttatgatcatacgtttgttattga |
243 |
Q |
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| T |
1527950 |
cttggttttatctcctaatttatgatcatacgtttgttattga |
1527992 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 37483157 - 37483088
Alignment:
| Q |
8 |
actccaccgaacatcccatactactcaatgtggat-tagggcaccccatattaccaaagtccctatcaca |
76 |
Q |
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| T |
37483157 |
actccaccaaacatcccatactacttgatgtggaacttgggcaccccataatacccaagtccctatcaca |
37483088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 1442233 - 1442298
Alignment:
| Q |
10 |
tccaccgaacatcccatactactcaatgtgg-attagggcaccccatattaccaaagtccctatca |
74 |
Q |
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| T |
1442233 |
tccactgagcatcccatactactcgatgtggtacttgggcaccccatactacccaagtccctatca |
1442298 |
T |
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