View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_24 (Length: 229)
Name: NF7239_low_24
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 11428091 - 11427864
Alignment:
| Q |
2 |
cacccataaaaatcgccattgttgtgaatgatgcaaggaaaacactagcaagaccgccaatagcatgaggatatttgaagatggaaaaagggtgcagcct |
101 |
Q |
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| T |
11428091 |
cacccatgaaaatcgccattgttgtgaatgatgcaaggaaaacactagcaagaccgccaatagcatgaggatatttgaagatggaaaaagggtgcagcct |
11427992 |
T |
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| Q |
102 |
cgacgaaaatgagatcgaatcagtggttctacttgtagctgtagctaaatgcaagatcccaacaagccaaattaatccactgaaaatcgaaacaacccaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11427991 |
cgacgaaaatgagatcgaatcagtggttctacttgtagctgtagctaaatgcaagatcccaacaagccaaattaatccactgaaaatcgaaacaacccaa |
11427892 |
T |
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| Q |
202 |
agactcataatatcactcttattttcat |
229 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11427891 |
agactcataatatcactcttattttcat |
11427864 |
T |
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