View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_25 (Length: 223)
Name: NF7239_low_25
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 40957814 - 40958003
Alignment:
| Q |
19 |
tttctgtcaggacattacacaatccccgaatgacaccttaatgatcacagggcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacc |
118 |
Q |
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| T |
40957814 |
tttctgtcaggacattacacaatcccccaatgacaccttaatgatcacaggtcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacc |
40957913 |
T |
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| Q |
119 |
tggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcat |
208 |
Q |
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| T |
40957914 |
tggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcat |
40958003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 40944861 - 40945010
Alignment:
| Q |
59 |
atgatcacagggcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttcc |
158 |
Q |
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| T |
40944861 |
atgatcacagggcagtggttctaccgtccagatgaagcagaaaaaaagggaggtggtagctggcaatccgttgacaccagagagctgttttatagtttcc |
40944960 |
T |
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| Q |
159 |
accaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcat |
208 |
Q |
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| T |
40944961 |
accgagatgaggttcctgcagaatctgttatgcataagtgtgtggtgcat |
40945010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 22508269 - 22508205
Alignment:
| Q |
136 |
gagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtg |
200 |
Q |
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| T |
22508269 |
gagagagttattttatagtttccaccaatatgttgttccggcagaaaatgttatgcatacatgtg |
22508205 |
T |
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