View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_low_27 (Length: 221)

Name: NF7239_low_27
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_low_27
NF7239_low_27
[»] chr2 (7 HSPs)
chr2 (48-209)||(28220359-28220523)
chr2 (132-209)||(28215701-28215778)
chr2 (129-197)||(32309286-32309354)
chr2 (129-197)||(32565481-32565549)
chr2 (129-197)||(32799712-32799780)
chr2 (129-197)||(32806666-32806734)
chr2 (129-197)||(32815103-32815171)
[»] chr6 (1 HSPs)
chr6 (129-197)||(301432-301500)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 28220359 - 28220523
Alignment:
Q  48 gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaa----tcaa 143  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||     
T  28220359 gttaccatcgtccaagcttctctattcaacttcgggaagattgatttt-ggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaaagaatcag 28220457  T
Q  144 agatggttccaatcttcaatataatttctataaggtttcctgccctcaagctgagaatattcttcg 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  28220458 agatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcg 28220523  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 28215778 - 28215701
Alignment:
Q  132 tgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctgagaatattcttcg 209  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||| ||||    
T  28215778 tgaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcg 28215701  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 32309286 - 32309354
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  32309286 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 32309354  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32565549 - 32565481
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  32565549 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 32565481  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32799780 - 32799712
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  32799780 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 32799712  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32806734 - 32806666
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  32806734 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 32806666  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32815171 - 32815103
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  32815171 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 32815103  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 301432 - 301500
Alignment:
Q  129 caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||||    
T  301432 caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattctagccctcaagctga 301500  T

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