View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_3 (Length: 593)
Name: NF7239_low_3
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 17 - 574
Target Start/End: Complemental strand, 11770164 - 11769609
Alignment:
| Q |
17 |
catcagaaaatctaccagttggaaacttgaaaaaggtttcaccatatggtgagaaattagcttgataatcagtagttgtattgatataattattgttccc |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
11770164 |
catcagaaaatctaccagttgaaaacttgaaaaaggtttcaccatatggtgagaaattagcttgataatcagtagttgtattgatatagttattgtttcc |
11770065 |
T |
|
| Q |
117 |
aacatcaaataatgaatctccaaatataaataatgcaacatgttcttttggtaaacatatatcaccaaggcactgtgttggaattagcattccataactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11770064 |
aacatcaaataatgaatctccaaatataaataatgcaacatgttcttttggtaaacatatatcaccaaggcactgtgttggaattagcattccataactt |
11769965 |
T |
|
| Q |
217 |
aggaagaaaattaggaaacaaaaactgaatttattgcttgccatctatgttgatttctctgaatacccttctgtttctatcaagatatgtggttcatata |
316 |
Q |
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| T |
11769964 |
atgaagaaaattaggaaacaaaaactgaatttattgcttgccatctatgttgatttctcagaatacccttctgtttctatcaagatatgtggttcatata |
11769865 |
T |
|
| Q |
317 |
acataatgttatatataatacattggaagtacttttcaaaaagaaaataatacattggagggtccctatattggaagtgccaggcttgcatctaagaatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11769864 |
acataatgttatatataatacattggaagtacttttcaaaaagaaaataatacattggagggtccctatattggaagtgccaggcttgcatctaagaatt |
11769765 |
T |
|
| Q |
417 |
gtgtaaaagtctaactaaaaatgtttgaacatagcgtgtgggacttgaaaataaaaactctgagttccatatttggataatatactatactatagtacgt |
516 |
Q |
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| T |
11769764 |
gtgtaaaagtctaactaaaaatgtttgaagatagcgtgtgggacttgaaaataaaaa--ctgagttccatatttggataatatagcatactatagtacgt |
11769667 |
T |
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| Q |
517 |
ctaatttgaaaaatactaaagtctcacattgcttatacccacattggttagttttcaa |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11769666 |
ctaatttgaaaaatactaaagtctcacattgcttatacccacattggttagttttcaa |
11769609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 11783429 - 11783159
Alignment:
| Q |
17 |
catcagaaaatctaccagttggaaacttgaaaaaggtttcaccatatggtgagaaattagcttgataatcagtagttgtattgatataattattgttccc |
116 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||||||| | |||||||||| |||||||||||||||||||| || |
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| T |
11783429 |
catcagaaaatctaccagatggatacttgaagaaggtttcaccatatggtgggtaattagccagcaaatcagtagtagtattgatataattattgtttcc |
11783330 |
T |
|
| Q |
117 |
aacatcaaataatgaatctccaaatataaataatgcaacatgttcttttggtaaacatatatcaccaaggcactgtgttggaattagcattccataactt |
216 |
Q |
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||||||||| || ||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| | |
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| T |
11783329 |
aacatcaaagaaagaatctccaaatacaaataacgcaacatgttcttttggtacacatatattaccaaggcactgtgttgaaattagaattccataacat |
11783230 |
T |
|
| Q |
217 |
aggaagaaaattaggaaacaaaaactgaatttattgcttgccatctatgttgatttctctgaatacccttc |
287 |
Q |
| |
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||||||||||||||||||| |||| ||||||| | |||||||||||| ||| ||||||| |||||| |||| |
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| T |
11783229 |
aggaagaaaattaggaaaccaaaattgaatttttcgcttgccatctaagttaatttctcagaatactcttc |
11783159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 11763908 - 11763680
Alignment:
| Q |
17 |
catcagaaaatctaccagttggaaacttgaaaaaggtttcaccatatggtgagaaattagcttgataatcagtagttgtattgatataattattgttccc |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||| || |||| ||||||||| |||| |||| | |||||||| || |
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| T |
11763908 |
catcagaaaatctaccagttggatacttgaagaaggtttcaccatatggtgggtaatttgcctgattatcagtagtagtatcgataaagttattgtttcc |
11763809 |
T |
|
| Q |
117 |
aacatcaaataatgaatctccaaatataaataatgcaacatgttcttttggtaaacatatatcaccaaggcactgtgttggaattagcattccataactt |
216 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
11763808 |
aacatcaaataatgaatctccaaatacaaataatgcaacatgttcttttggtagacatattttaccaaggcactgtgttggaattaggattccataactt |
11763709 |
T |
|
| Q |
217 |
aggaagaaaattaggaaacaaaaactgaa |
245 |
Q |
| |
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|||||||||||||||||||| ||| |||| |
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| T |
11763708 |
aggaagaaaattaggaaacataaaatgaa |
11763680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 11777547 - 11777288
Alignment:
| Q |
17 |
catcagaaaatctaccagttggaaacttgaaaaaggtttcaccatatggtgagaaattagcttgataatcagtagttgtattgatataattattgttccc |
116 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||||||||||||||| | | ||| | ||||||||| ||||||||||||||||||||||||| || |
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| T |
11777547 |
catcagaaaccctaccagttggatacttgaagaaggtttcaccatatggtgggtagttaacctgataatcactagttgtattgatataattattgtttcc |
11777448 |
T |
|
| Q |
117 |
aacatcaaataatgaatctccaaatataaataatgcaacatgttcttttggtaaacatatatcaccaaggcactgtgttggaattagcattccataactt |
216 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||| ||||||||||||| | |||||| | ||||| |||||||||||||||||||||||| | |
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| T |
11777447 |
aacatcaaacaatgaatctccaaatacaaataatgcagcatgttcttttggcagacatatgttaccaa------gtgttggaattagcattccataacat |
11777354 |
T |
|
| Q |
217 |
aggaagaaaattaggaaacaaaaactgaatttattgcttgccatctatgttgatttctctgaatac |
282 |
Q |
| |
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||||||||||||| |||||||||| ||| ||| |||||||||||||| ||| ||||||| |||||| |
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|
| T |
11777353 |
aggaagaaaattacgaaacaaaaattgatttttttgcttgccatctaagttaatttctcagaatac |
11777288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 8093862 - 8093931
Alignment:
| Q |
91 |
gttgtattgatataattattgttcccaacatcaaataatgaatctccaaatataaataatgcaacatgtt |
160 |
Q |
| |
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||||||||||| ||||| ||||| ||| |||||||| ||||||||||||||| |||| |||| |||||| |
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| T |
8093862 |
gttgtattgatgtaattgttgtttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtt |
8093931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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